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Table 19.2 – continued from previous page
Field
Supported
Unsupported
Partial
Unknown/Missing
WellSample - Im-
ageRef465
10
0
0
141
WellSample - In-
dex
466
10
0
0
141
WellSample - Posi-
tionX
467
4
0
0
147
WellSample - Posi-
tionY
468
4
0
0
147
WellSample - Time-
point
469
0
0
0
151
XMLAnnotation
-
AnnotationRef470
0
0
0
151
XMLAnnotation
-
ID
471
0
0
0
151
XMLAnnotation
-
Namespace
472
0
0
0
151
XMLAnnotation
-
Value
473
0
0
0
151
19.2.1 SlidebookReader
This page lists supported metadata fields for the Bio-Formats Olympus Slidebook format reader.
These fields are from theOMEdatamodel474. Bio-Formats standardizes each format’s original metadata to and from the OME
data model so that you can work with a particular piece of metadata (e.g. physical width of the image in microns) in a format-
independent way.
Of the 473 fields documented in themetadatasummarytable:
• The file format itself supports 32 ofthem(6%).
• Ofthose, Bio-Formats fully or partially converts 32 (100%).
Supported fields
These fields are fully supportedby the Bio-Formats Olympus Slidebookformatreader:
• Channel:ID
475
• Channel:NDFilter
476
• Channel:Name
477
• Channel:SamplesPerPixel
478
• Image:AcquisitionDate
479
• Image:Description
480
465
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#ImageRef_ID
466
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#WellSample_Index
467
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#WellSample_PositionX
468
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#WellSample_PositionY
469
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#WellSample_Timepoint
470http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SA_xsd.html#AnnotationRef_ID
471http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SA_xsd.html#Annotation_ID
472http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SA_xsd.html#Annotation_Namespace
473http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SA_xsd.html#XMLAnnotation_Value
474
http://www.openmicroscopy.org/site/support/ome-model/
475
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_ID
476
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_NDFilter
477
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_Name
478
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_SamplesPerPixel
479
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_AcquisitionDate
480
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Description
19.2. Metadata fields
214
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• Image:ID
481
• Image:InstrumentRef
482
• Image:Name483
• Instrument:ID484
• Objective:Correction
485
• Objective:ID
486
• Objective:Immersion
487
• Objective:Model
488
• Objective:NominalMagnification
489
• ObjectiveSettings:ID
490
• Pixels:BinDataBigEndian
491
• Pixels:DimensionOrder
492
• Pixels:ID
493
• Pixels:PhysicalSizeX
494
• Pixels:PhysicalSizeY495
• Pixels:PhysicalSizeZ496
• Pixels:SizeC
497
• Pixels:SizeT
498
• Pixels:SizeX
499
• Pixels:SizeY
500
• Pixels:SizeZ
501
• Pixels:Type
502
• Plane:ExposureTime
503
• Plane:TheC
504
• Plane:TheT
505
• Plane:TheZ506
481
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_ID
482
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#InstrumentRef_ID
483
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Name
484http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Instrument_ID
485http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Objective_Correction
486http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Objective_ID
487http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Objective_Immersion
488http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#ManufacturerSpec_Model
489
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Objective_NominalMagnification
490
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#ObjectiveSettings_ID
491
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/BinaryFile_xsd.html#BinData_BigEndian
492
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_DimensionOrder
493
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_ID
494
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeX
495
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeY
496
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeZ
497
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeC
498
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeT
499
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeX
500
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeY
501
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeZ
502
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_Type
503
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_ExposureTime
504
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheC
505
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheT
506
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheZ
19.2. Metadata fields
215
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Total supported: 32
Total unknown or missing: 441
19.2.2 AIMReader
This page lists supported metadata fields for the Bio-Formats AIM format reader.
These fields are from theOMEdatamodel
507
.Bio-Formats standardizes each format’s original metadata to and from the OME
data model so that you can work with a particular piece of metadata (e.g. physical width of the image in microns) in a format-
independent way.
Of the 473 fields documented in themetadatasummarytable:
• The file format itself supports 20 ofthem(4%).
• Ofthose, Bio-Formats fully or partially converts 20 (100%).
Supported fields
These fields are fully supportedby the Bio-Formats AIM format reader:
• Channel:ID
508
• Channel:SamplesPerPixel
509
• Image:AcquisitionDate510
• Image:ID511
• Image:Name
512
• Pixels:BinDataBigEndian
513
• Pixels:DimensionOrder
514
• Pixels:ID
515
• Pixels:PhysicalSizeX
516
• Pixels:PhysicalSizeY
517
• Pixels:PhysicalSizeZ
518
• Pixels:SizeC
519
• Pixels:SizeT
520
• Pixels:SizeX521
• Pixels:SizeY522
• Pixels:SizeZ
523
• Pixels:Type
524
507http://www.openmicroscopy.org/site/support/ome-model/
508http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_ID
509http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_SamplesPerPixel
510http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_AcquisitionDate
511http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_ID
512http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Name
513http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/BinaryFile_xsd.html#BinData_BigEndian
514http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_DimensionOrder
515http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_ID
516http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeX
517http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeY
518
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeZ
519
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeC
520
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeT
521
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeX
522
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeY
523
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeZ
524
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_Type
19.2. Metadata fields
216
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• Plane:TheC
525
• Plane:TheT
526
• Plane:TheZ527
Total supported: 20
Total unknown or missing: 453
19.2.3 AliconaReader
This page lists supported metadata fields for the Bio-Formats Alicona AL3D format reader.
These fields are from theOMEdatamodel
528
.Bio-Formats standardizes each format’s original metadata to and from the OME
data model so that you can work with a particular piece of metadata (e.g. physical width of the image in microns) in a format-
independent way.
Of the 473 fields documented in themetadatasummarytable:
• The file format itself supports 31 ofthem(6%).
• Ofthose, Bio-Formats fully or partially converts 31 (100%).
Supported fields
These fields are fully supportedby the Bio-Formats Alicona AL3D formatreader:
• Channel:ID529
• Channel:SamplesPerPixel
530
• Detector:ID
531
• Detector:Type
532
• DetectorSettings:ID
533
• DetectorSettings:Voltage
534
• Image:AcquisitionDate
535
• Image:ID
536
• Image:InstrumentRef
537
• Image:Name
538
• Instrument:ID539
• Objective:CalibratedMagnification540
• Objective:Correction
541
• Objective:ID
542
525http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheC
526http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheT
527http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheZ
528http://www.openmicroscopy.org/site/support/ome-model/
529http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_ID
530http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_SamplesPerPixel
531http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Detector_ID
532http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Detector_Type
533http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#DetectorSettings_ID
534http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#DetectorSettings_Voltage
535http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_AcquisitionDate
536
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_ID
537
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#InstrumentRef_ID
538
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Name
539
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Instrument_ID
540
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Objective_CalibratedMagnification
541
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Objective_Correction
542
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Objective_ID
19.2. Metadata fields
217
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• Objective:Immersion
543
• Objective:WorkingDistance
544
• ObjectiveSettings:ID545
• Pixels:BinDataBigEndian546
• Pixels:DimensionOrder
547
• Pixels:ID
548
• Pixels:PhysicalSizeX
549
• Pixels:PhysicalSizeY
550
• Pixels:SizeC
551
• Pixels:SizeT
552
• Pixels:SizeX
553
• Pixels:SizeY
554
• Pixels:SizeZ
555
• Pixels:Type
556
• Plane:TheC557
• Plane:TheT558
• Plane:TheZ
559
Total supported: 31
Total unknown or missing: 442
19.2.4 GelReader
This page lists supported metadata fields for the Bio-Formats Amersham Biosciences GEL format reader.
These fields are from theOMEdatamodel
560
.Bio-Formats standardizes each format’s original metadata to and from the OME
data model so that you can work with a particular piece of metadata (e.g. physical width of the image in microns) in a format-
independent way.
Of the 473 fields documented in themetadatasummarytable:
• The file format itself supports 19 ofthem(4%).
• Ofthose, Bio-Formats fully or partially converts 19 (100%).
543http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Objective_Immersion
544http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Objective_WorkingDistance
545http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#ObjectiveSettings_ID
546http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/BinaryFile_xsd.html#BinData_BigEndian
547http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_DimensionOrder
548http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_ID
549http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeX
550http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeY
551http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeC
552http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeT
553
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeX
554
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeY
555
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeZ
556
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_Type
557
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheC
558
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheT
559
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheZ
560
http://www.openmicroscopy.org/site/support/ome-model/
19.2. Metadata fields
218
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Supported fields
These fields are fully supportedby the Bio-Formats Amersham Biosciences GEL formatreader:
• Channel:ID
561
• Channel:SamplesPerPixel
562
• Image:AcquisitionDate
563
• Image:ID
564
• Image:Name
565
• Pixels:BinDataBigEndian
566
• Pixels:DimensionOrder
567
• Pixels:ID568
• Pixels:PhysicalSizeX569
• Pixels:PhysicalSizeY
570
• Pixels:SizeC
571
• Pixels:SizeT
572
• Pixels:SizeX
573
• Pixels:SizeY
574
• Pixels:SizeZ
575
• Pixels:Type
576
• Plane:TheC
577
• Plane:TheT
578
• Plane:TheZ579
Total supported: 19
Total unknown or missing: 454
19.2.5 AmiraReader
This page lists supported metadata fields for the Bio-Formats Amira format reader.
These fields are from theOMEdatamodel
580
.Bio-Formats standardizes each format’s original metadata to and from the OME
data model so that you can work with a particular piece of metadata (e.g. physical width of the image in microns) in a format-
independent way.
561
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_ID
562
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_SamplesPerPixel
563
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_AcquisitionDate
564
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_ID
565
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Name
566
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/BinaryFile_xsd.html#BinData_BigEndian
567
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_DimensionOrder
568
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_ID
569
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeX
570
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeY
571
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeC
572
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeT
573
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeX
574
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeY
575
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeZ
576
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_Type
577
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheC
578
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheT
579
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheZ
580
http://www.openmicroscopy.org/site/support/ome-model/
19.2. Metadata fields
219
Of the 473 fields documented in themetadatasummarytable:
• The file format itself supports 20 ofthem(4%).
• Ofthose, Bio-Formats fully or partially converts 20 (100%).
Supported fields
These fields are fully supportedby the Bio-Formats Amira format reader:
• Channel:ID581
• Channel:SamplesPerPixel
582
• Image:AcquisitionDate
583
• Image:ID
584
• Image:Name
585
• Pixels:BinDataBigEndian
586
• Pixels:DimensionOrder
587
• Pixels:ID
588
• Pixels:PhysicalSizeX
589
• Pixels:PhysicalSizeY
590
• Pixels:PhysicalSizeZ591
• Pixels:SizeC592
• Pixels:SizeT
593
• Pixels:SizeX
594
• Pixels:SizeY
595
• Pixels:SizeZ
596
• Pixels:Type
597
• Plane:TheC
598
• Plane:TheT
599
• Plane:TheZ
600
Total supported: 20
Total unknown or missing: 453
581http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_ID
582http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_SamplesPerPixel
583http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_AcquisitionDate
584http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_ID
585
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Name
586
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/BinaryFile_xsd.html#BinData_BigEndian
587
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_DimensionOrder
588
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_ID
589
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeX
590
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeY
591
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeZ
592
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeC
593
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeT
594
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeX
595
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeY
596
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeZ
597
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_Type
598
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheC
599
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheT
600
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheZ
19.2. Metadata fields
220
19.2.6 AnalyzeReader
This page lists supported metadata fields for the Bio-Formats Analyze 7.5 format reader.
These fields are from theOMEdatamodel
601
.Bio-Formats standardizes each format’s original metadata to and from the OME
data model so that you can work with a particular piece of metadata (e.g. physical width of the image in microns) in a format-
independent way.
Of the 473 fields documented in themetadatasummarytable:
• The file format itself supports 22 ofthem(4%).
• Ofthose, Bio-Formats fully or partially converts 22 (100%).
Supported fields
These fields are fully supportedby the Bio-Formats Analyze 7.5 formatreader:
• Channel:ID
602
• Channel:SamplesPerPixel
603
• Image:AcquisitionDate
604
• Image:Description
605
• Image:ID
606
• Image:Name607
• Pixels:BinDataBigEndian608
• Pixels:DimensionOrder
609
• Pixels:ID
610
• Pixels:PhysicalSizeX
611
• Pixels:PhysicalSizeY
612
• Pixels:PhysicalSizeZ
613
• Pixels:SizeC
614
• Pixels:SizeT
615
• Pixels:SizeX
616
• Pixels:SizeY
617
• Pixels:SizeZ
618
• Pixels:TimeIncrement619
• Pixels:Type620
601
http://www.openmicroscopy.org/site/support/ome-model/
602
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_ID
603
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_SamplesPerPixel
604
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_AcquisitionDate
605
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Description
606
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_ID
607
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Name
608
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/BinaryFile_xsd.html#BinData_BigEndian
609
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_DimensionOrder
610
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_ID
611
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeX
612
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeY
613
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeZ
614
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeC
615
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeT
616
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeX
617
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeY
618
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeZ
619
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_TimeIncrement
620
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_Type
19.2. Metadata fields
221
• Plane:TheC
621
• Plane:TheT
622
• Plane:TheZ623
Total supported: 22
Total unknown or missing: 451
19.2.7 SVSReader
This page lists supported metadata fields for the Bio-Formats Aperio SVSformat reader.
These fields are from theOMEdatamodel
624
.Bio-Formats standardizes each format’s original metadata to and from the OME
data model so that you can work with a particular piece of metadata (e.g. physical width of the image in microns) in a format-
independent way.
Of the 473 fields documented in themetadatasummarytable:
• The file format itself supports 18 ofthem(3%).
• Ofthose, Bio-Formats fully or partially converts 18 (100%).
Supported fields
These fields are fully supportedby the Bio-Formats Aperio SVSformatreader:
• Channel:ID625
• Channel:SamplesPerPixel
626
• Image:AcquisitionDate
627
• Image:Description
628
• Image:ID
629
• Image:Name
630
• Pixels:BinDataBigEndian
631
• Pixels:DimensionOrder
632
• Pixels:ID
633
• Pixels:SizeC
634
• Pixels:SizeT635
• Pixels:SizeX636
• Pixels:SizeY
637
• Pixels:SizeZ
638
621
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheC
622
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheT
623
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheZ
624
http://www.openmicroscopy.org/site/support/ome-model/
625
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_ID
626
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_SamplesPerPixel
627
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_AcquisitionDate
628http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Description
629http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_ID
630http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Name
631http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/BinaryFile_xsd.html#BinData_BigEndian
632http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_DimensionOrder
633http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_ID
634http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeC
635http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeT
636http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeX
637http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeY
638http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeZ
19.2. Metadata fields
222
• Pixels:Type
639
• Plane:TheC
640
• Plane:TheT641
• Plane:TheZ642
Total supported: 18
Total unknown or missing: 455
19.2.8 CellWorxReader
This page lists supported metadata fields for the Bio-Formats CellWorx format reader.
These fields are from theOMEdatamodel
643
.Bio-Formats standardizes each format’s original metadata to and from the OME
data model so that you can work with a particular piece of metadata (e.g. physical width of the image in microns) in a format-
independent way.
Of the 473 fields documented in themetadatasummarytable:
• The file format itself supports 43 ofthem(9%).
• Ofthose, Bio-Formats fully or partially converts 43 (100%).
Supported fields
These fields are fully supportedby the Bio-Formats CellWorx formatreader:
• Channel:EmissionWavelength
644
• Channel:ExcitationWavelength
645
• Channel:ID
646
• Channel:Name
647
• Channel:SamplesPerPixel
648
• Detector:ID
649
• DetectorSettings:Gain
650
• DetectorSettings:ID
651
• Image:AcquisitionDate
652
• Image:ID653
• Image:InstrumentRef654
• Image:Name
655
• Instrument:ID
656
639
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_Type
640http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheC
641http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheT
642http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheZ
643http://www.openmicroscopy.org/site/support/ome-model/
644http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_EmissionWavelength
645http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_ExcitationWavelength
646http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_ID
647http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_Name
648http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_SamplesPerPixel
649http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Detector_ID
650http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#DetectorSettings_Gain
651http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#DetectorSettings_ID
652http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_AcquisitionDate
653http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_ID
654
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#InstrumentRef_ID
655
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Name
656
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Instrument_ID
19.2. Metadata fields
223
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