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• DetectorSettings:Gain
860
• Image:AcquisitionDate
861
• Image:ID862
• Image:Name863
• Pixels:BinDataBigEndian
864
• Pixels:DimensionOrder
865
• Pixels:ID
866
• Pixels:PhysicalSizeX
867
• Pixels:PhysicalSizeY
868
• Pixels:PhysicalSizeZ
869
• Pixels:SizeC
870
• Pixels:SizeT
871
• Pixels:SizeX
872
• Pixels:SizeY
873
• Pixels:SizeZ874
• Pixels:Type875
• Plane:TheC
876
• Plane:TheT
877
• Plane:TheZ
878
Totalsupported:22
Totalunknownormissing:451
19.2.16 BrukerReader
ThispagelistssupportedmetadatafieldsfortheBio-FormatsBrukerformatreader.
ThesefieldsarefromtheOMEdatamodel879.Bio-Formatsstandardizeseachformat’soriginalmetadatatoandfromtheOME
datamodelsothatyoucanworkwithaparticularpieceofmetadata(e.g. physicalwidthoftheimageinmicrons)inaformat-
independentway.
Ofthe473fieldsdocumentedinthemetadatasummarytable:
• Thefileformatitselfsupports21ofthem(4%).
• Ofthose,Bio-Formatsfullyorpartiallyconverts21(100%).
860
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#DetectorSettings_Gain
861
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_AcquisitionDate
862
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_ID
863
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Name
864
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/BinaryFile_xsd.html#BinData_BigEndian
865
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_DimensionOrder
866
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_ID
867
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeX
868
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeY
869
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeZ
870
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeC
871
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeT
872
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeX
873
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeY
874
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeZ
875
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_Type
876
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheC
877
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheT
878http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheZ
879http://www.openmicroscopy.org/site/support/ome-model/
19.2. Metadatafields
234
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Supportedfields
ThesefieldsarefullysupportedbytheBio-FormatsBrukerformatreader:
• Channel:ID
880
• Channel:SamplesPerPixel
881
• Experimenter:ID
882
• Experimenter:Institution
883
• Experimenter:LastName
884
• Image:AcquisitionDate
885
• Image:ExperimenterRef
886
• Image:ID887
• Image:Name888
• Pixels:BinDataBigEndian
889
• Pixels:DimensionOrder
890
• Pixels:ID
891
• Pixels:SizeC
892
• Pixels:SizeT
893
• Pixels:SizeX
894
• Pixels:SizeY
895
• Pixels:SizeZ
896
• Pixels:Type
897
• Plane:TheC898
• Plane:TheT899
• Plane:TheZ
900
Totalsupported:21
Totalunknownormissing:452
880
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_ID
881
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_SamplesPerPixel
882
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Experimenter_ID
883
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Experimenter_Institution
884
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Experimenter_LastName
885
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_AcquisitionDate
886
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#ExperimenterRef_ID
887
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_ID
888http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Name
889http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/BinaryFile_xsd.html#BinData_BigEndian
890http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_DimensionOrder
891
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_ID
892
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeC
893
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeT
894
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeX
895
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeY
896
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeZ
897
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_Type
898
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheC
899
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheT
900
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheZ
19.2. Metadatafields
235
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19.2.17 BurleighReader
ThispagelistssupportedmetadatafieldsfortheBio-FormatsBurleighformatreader.
ThesefieldsarefromtheOMEdatamodel
901
.Bio-Formatsstandardizeseachformat’soriginalmetadatatoandfromtheOME
datamodelsothatyoucanworkwithaparticularpieceofmetadata(e.g. physicalwidthoftheimageinmicrons)inaformat-
independentway.
Ofthe473fieldsdocumentedinthemetadatasummarytable:
• Thefileformatitselfsupports20ofthem(4%).
• Ofthose,Bio-Formatsfullyorpartiallyconverts20(100%).
Supportedfields
ThesefieldsarefullysupportedbytheBio-FormatsBurleighformatreader:
• Channel:ID
902
• Channel:SamplesPerPixel903
• Image:AcquisitionDate904
• Image:ID
905
• Image:Name
906
• Pixels:BinDataBigEndian
907
• Pixels:DimensionOrder
908
• Pixels:ID
909
• Pixels:PhysicalSizeX
910
• Pixels:PhysicalSizeY
911
• Pixels:PhysicalSizeZ
912
• Pixels:SizeC
913
• Pixels:SizeT
914
• Pixels:SizeX915
• Pixels:SizeY916
• Pixels:SizeZ
917
• Pixels:Type
918
• Plane:TheC
919
901http://www.openmicroscopy.org/site/support/ome-model/
902http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_ID
903
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_SamplesPerPixel
904
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_AcquisitionDate
905
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_ID
906
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Name
907
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/BinaryFile_xsd.html#BinData_BigEndian
908
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_DimensionOrder
909
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_ID
910
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeX
911
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeY
912
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeZ
913
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeC
914
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeT
915
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeX
916
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeY
917http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeZ
918http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_Type
919http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheC
19.2. Metadatafields
236
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• Plane:TheT
920
• Plane:TheZ
921
Totalsupported:20
Totalunknownormissing:453
19.2.18 DNGReader
ThispagelistssupportedmetadatafieldsfortheBio-FormatsDNGformatreader.
ThesefieldsarefromtheOMEdatamodel
922
.Bio-Formatsstandardizeseachformat’soriginalmetadatatoandfromtheOME
datamodelsothatyoucanworkwithaparticularpieceofmetadata(e.g. physicalwidthoftheimageinmicrons)inaformat-
independentway.
Ofthe473fieldsdocumentedinthemetadatasummarytable:
• Thefileformatitselfsupports17ofthem(3%).
• Ofthose,Bio-Formatsfullyorpartiallyconverts17(100%).
Supportedfields
ThesefieldsarefullysupportedbytheBio-FormatsDNGformatreader:
• Channel:ID923
• Channel:SamplesPerPixel924
• Image:AcquisitionDate
925
• Image:ID
926
• Image:Name
927
• Pixels:BinDataBigEndian
928
• Pixels:DimensionOrder
929
• Pixels:ID
930
• Pixels:SizeC
931
• Pixels:SizeT
932
• Pixels:SizeX
933
• Pixels:SizeY934
• Pixels:SizeZ935
• Pixels:Type
936
• Plane:TheC
937
920http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheT
921http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheZ
922http://www.openmicroscopy.org/site/support/ome-model/
923http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_ID
924
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_SamplesPerPixel
925
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_AcquisitionDate
926
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_ID
927
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Name
928
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/BinaryFile_xsd.html#BinData_BigEndian
929
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_DimensionOrder
930
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_ID
931
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeC
932
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeT
933
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeX
934
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeY
935
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeZ
936
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_Type
937
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheC
19.2. Metadatafields
237
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• Plane:TheT
938
• Plane:TheZ
939
Totalsupported:17
Totalunknownormissing:456
19.2.19 CellomicsReader
ThispagelistssupportedmetadatafieldsfortheBio-FormatsCellomicsC01formatreader.
ThesefieldsarefromtheOMEdatamodel
940
.Bio-Formatsstandardizeseachformat’soriginalmetadatatoandfromtheOME
datamodelsothatyoucanworkwithaparticularpieceofmetadata(e.g. physicalwidthoftheimageinmicrons)inaformat-
independentway.
Ofthe473fieldsdocumentedinthemetadatasummarytable:
• Thefileformatitselfsupports29ofthem(6%).
• Ofthose,Bio-Formatsfullyorpartiallyconverts29(100%).
Supportedfields
ThesefieldsarefullysupportedbytheBio-FormatsCellomicsC01formatreader:
• Channel:ID941
• Channel:SamplesPerPixel942
• Image:AcquisitionDate
943
• Image:ID
944
• Image:Name
945
• Pixels:BinDataBigEndian
946
• Pixels:DimensionOrder
947
• Pixels:ID
948
• Pixels:PhysicalSizeX
949
• Pixels:PhysicalSizeY
950
• Pixels:SizeC
951
• Pixels:SizeT952
• Pixels:SizeX953
• Pixels:SizeY
954
• Pixels:SizeZ
955
938http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheT
939http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheZ
940http://www.openmicroscopy.org/site/support/ome-model/
941http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_ID
942
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_SamplesPerPixel
943
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_AcquisitionDate
944
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_ID
945
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Name
946
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/BinaryFile_xsd.html#BinData_BigEndian
947
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_DimensionOrder
948
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_ID
949
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeX
950
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeY
951
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeC
952
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeT
953
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeX
954
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeY
955
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeZ
19.2. Metadatafields
238
C# PDF Page Extract Library: copy, paste, cut PDF pages in C#.net
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• Pixels:Type
956
• Plane:TheC
957
• Plane:TheT958
• Plane:TheZ959
• Plate:ColumnNamingConvention
960
• Plate:ID
961
• Plate:Name
962
• Plate:RowNamingConvention
963
• Well:Column
964
• Well:ID
965
• Well:Row
966
• WellSample:ID
967
• WellSample:ImageRef
968
• WellSample:Index
969
Totalsupported:29
Totalunknownormissing:444
19.2.20 CellSensReader
ThispagelistssupportedmetadatafieldsfortheBio-FormatsCellSensVSIformatreader.
ThesefieldsarefromtheOMEdatamodel
970
.Bio-Formatsstandardizeseachformat’soriginalmetadatatoandfromtheOME
datamodelsothatyoucanworkwithaparticularpieceofmetadata(e.g. physicalwidthoftheimageinmicrons)inaformat-
independentway.
Ofthe473fieldsdocumentedinthemetadatasummarytable:
• Thefileformatitselfsupports17ofthem(3%).
• Ofthose,Bio-Formatsfullyorpartiallyconverts17(100%).
Supportedfields
ThesefieldsarefullysupportedbytheBio-FormatsCellSensVSIformatreader:
• Channel:ID971
• Channel:SamplesPerPixel
972
• Image:AcquisitionDate
973
956http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_Type
957http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheC
958http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheT
959http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheZ
960http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#Plate_ColumnNamingConvention
961http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#Plate_ID
962http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#Plate_Name
963http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#Plate_RowNamingConvention
964http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#Well_Column
965http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#Well_ID
966http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#Well_Row
967http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#WellSample_ID
968http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#ImageRef_ID
969http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#WellSample_Index
970
http://www.openmicroscopy.org/site/support/ome-model/
971
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_ID
972
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_SamplesPerPixel
973
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_AcquisitionDate
19.2. Metadatafields
239
• Image:ID
974
• Image:Name
975
• Pixels:BinDataBigEndian976
• Pixels:DimensionOrder977
• Pixels:ID
978
• Pixels:SizeC
979
• Pixels:SizeT
980
• Pixels:SizeX
981
• Pixels:SizeY
982
• Pixels:SizeZ
983
• Pixels:Type
984
• Plane:TheC
985
• Plane:TheT
986
• Plane:TheZ
987
Totalsupported:17
Totalunknownormissing:456
19.2.21 DeltavisionReader
ThispagelistssupportedmetadatafieldsfortheBio-FormatsDeltavisionformatreader.
ThesefieldsarefromtheOMEdatamodel
988
.Bio-Formatsstandardizeseachformat’soriginalmetadatatoandfromtheOME
datamodelsothatyoucanworkwithaparticularpieceofmetadata(e.g. physicalwidthoftheimageinmicrons)inaformat-
independentway.
Ofthe473fieldsdocumentedinthemetadatasummarytable:
• Thefileformatitselfsupports50ofthem(10%).
• Ofthose,Bio-Formatsfullyorpartiallyconverts50(100%).
Supportedfields
ThesefieldsarefullysupportedbytheBio-FormatsDeltavisionformatreader:
• Channel:EmissionWavelength989
• Channel:ExcitationWavelength
990
• Channel:ID
991
974http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_ID
975
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Name
976http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/BinaryFile_xsd.html#BinData_BigEndian
977http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_DimensionOrder
978http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_ID
979http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeC
980
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeT
981
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeX
982
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeY
983
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeZ
984
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_Type
985
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheC
986
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheT
987
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheZ
988
http://www.openmicroscopy.org/site/support/ome-model/
989
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_EmissionWavelength
990
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_ExcitationWavelength
991
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_ID
19.2. Metadatafields
240
• Channel:NDFilter
992
• Channel:Name
993
• Channel:SamplesPerPixel994
• Detector:ID995
• Detector:Model
996
• Detector:Type
997
• DetectorSettings:Binning
998
• DetectorSettings:Gain
999
• DetectorSettings:ID
1000
• DetectorSettings:ReadOutRate
1001
• Image:AcquisitionDate
1002
• Image:Description
1003
• Image:ID
1004
• Image:InstrumentRef
1005
• Image:Name1006
• ImagingEnvironment:Temperature1007
• Instrument:ID
1008
• Objective:CalibratedMagnification
1009
• Objective:Correction
1010
• Objective:ID
1011
• Objective:Immersion
1012
• Objective:LensNA
1013
• Objective:Manufacturer
1014
• Objective:Model
1015
• Objective:NominalMagnification
1016
• Objective:WorkingDistance1017
992http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_NDFilter
993http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_Name
994http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_SamplesPerPixel
995http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Detector_ID
996http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#ManufacturerSpec_Model
997
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Detector_Type
998
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#DetectorSettings_Binning
999
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#DetectorSettings_Gain
1000
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#DetectorSettings_ID
1001
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#DetectorSettings_ReadOutRate
1002
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_AcquisitionDate
1003
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Description
1004
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_ID
1005
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#InstrumentRef_ID
1006
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Name
1007
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#ImagingEnvironment_Temperature
1008
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Instrument_ID
1009http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Objective_CalibratedMagnification
1010http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Objective_Correction
1011http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Objective_ID
1012
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Objective_Immersion
1013
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Objective_LensNA
1014
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#ManufacturerSpec_Manufacturer
1015
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#ManufacturerSpec_Model
1016
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Objective_NominalMagnification
1017
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Objective_WorkingDistance
19.2. Metadatafields
241
• ObjectiveSettings:ID
1018
• Pixels:BinDataBigEndian
1019
• Pixels:DimensionOrder1020
• Pixels:ID1021
• Pixels:PhysicalSizeX
1022
• Pixels:PhysicalSizeY
1023
• Pixels:PhysicalSizeZ
1024
• Pixels:SizeC
1025
• Pixels:SizeT
1026
• Pixels:SizeX
1027
• Pixels:SizeY
1028
• Pixels:SizeZ
1029
• Pixels:Type
1030
• Plane:DeltaT
1031
• Plane:ExposureTime1032
• Plane:PositionX1033
• Plane:PositionY
1034
• Plane:PositionZ
1035
• Plane:TheC
1036
• Plane:TheT
1037
• Plane:TheZ
1038
Totalsupported:50
Totalunknownormissing:423
19.2.22 DicomReader
ThispagelistssupportedmetadatafieldsfortheBio-FormatsDICOMformatreader.
ThesefieldsarefromtheOMEdatamodel
1039
.Bio-Formatsstandardizeseachformat’soriginalmetadatatoandfromtheOME
datamodelsothatyoucanworkwithaparticularpieceofmetadata(e.g. physicalwidthoftheimageinmicrons)inaformat-
independentway.
1018
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#ObjectiveSettings_ID
1019
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/BinaryFile_xsd.html#BinData_BigEndian
1020
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_DimensionOrder
1021
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_ID
1022
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeX
1023
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeY
1024
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeZ
1025
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeC
1026
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeT
1027
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeX
1028
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeY
1029http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeZ
1030http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_Type
1031http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_DeltaT
1032
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_ExposureTime
1033
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_PositionX
1034
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_PositionY
1035
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_PositionZ
1036
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheC
1037
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheT
1038
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheZ
1039
http://www.openmicroscopy.org/site/support/ome-model/
19.2. Metadatafields
242
Ofthe473fieldsdocumentedinthemetadatasummarytable:
• Thefileformatitselfsupports21ofthem(4%).
• Ofthose,Bio-Formatsfullyorpartiallyconverts21(100%).
Supportedfields
ThesefieldsarefullysupportedbytheBio-FormatsDICOMformatreader:
• Channel:ID1040
• Channel:SamplesPerPixel
1041
• Image:AcquisitionDate
1042
• Image:Description
1043
• Image:ID
1044
• Image:Name
1045
• Pixels:BinDataBigEndian
1046
• Pixels:DimensionOrder
1047
• Pixels:ID
1048
• Pixels:PhysicalSizeX
1049
• Pixels:PhysicalSizeY1050
• Pixels:PhysicalSizeZ1051
• Pixels:SizeC
1052
• Pixels:SizeT
1053
• Pixels:SizeX
1054
• Pixels:SizeY
1055
• Pixels:SizeZ
1056
• Pixels:Type
1057
• Plane:TheC
1058
• Plane:TheT
1059
• Plane:TheZ
1060
Totalsupported:21
Totalunknownormissing:452
1040
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_ID
1041
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_SamplesPerPixel
1042
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_AcquisitionDate
1043
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Description
1044
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_ID
1045
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Name
1046
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/BinaryFile_xsd.html#BinData_BigEndian
1047
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_DimensionOrder
1048
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_ID
1049
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeX
1050
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeY
1051
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeZ
1052
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeC
1053
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeT
1054
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeX
1055
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeY
1056
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeZ
1057
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_Type
1058
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheC
1059
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheT
1060
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheZ
19.2. Metadatafields
243
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