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19.2.44 OpenlabRawReader
This page listssupported metadata fields for theBio-Formats Openlab RAW formatreader.
Thesefields are from theOMEdatamodel
1669
.Bio-Formatsstandardizeseach format’s originalmetadatato and from the OME
data model so thatyou can work with a particular piece of metadata (e.g. physicalwidth of theimagein microns) in aformat-
independentway.
Of the473 fields documented in themetadatasummarytable:
• Thefileformatitself supports17 ofthem(3%).
• Ofthose, Bio-Formats fully or partially converts17 (100%).
Supported fields
Thesefieldsare fully supportedby theBio-FormatsOpenlab RAW format reader:
• Channel:ID
1670
• Channel:SamplesPerPixel1671
• Image:AcquisitionDate1672
• Image:ID
1673
• Image:Name
1674
• Pixels:BinDataBigEndian
1675
• Pixels:DimensionOrder
1676
• Pixels:ID
1677
• Pixels:SizeC
1678
• Pixels:SizeT
1679
• Pixels:SizeX
1680
• Pixels:SizeY
1681
• Pixels:SizeZ
1682
• Pixels:Type1683
• Plane:TheC1684
• Plane:TheT
1685
• Plane:TheZ
1686
Totalsupported: 17
Totalunknown ormissing: 456
1669
http://www.openmicroscopy.org/site/support/ome-model/
1670
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_ID
1671
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_SamplesPerPixel
1672
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_AcquisitionDate
1673
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_ID
1674
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Name
1675
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/BinaryFile_xsd.html#BinData_BigEndian
1676
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_DimensionOrder
1677
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_ID
1678
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeC
1679
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeT
1680
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeX
1681
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeY
1682
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeZ
1683
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_Type
1684
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheC
1685
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheT
1686
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheZ
19.2. Metadata fields
274
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19.2.45 ImprovisionTiffReader
This page listssupported metadata fields for theBio-Formats Improvision TIFFformatreader.
Thesefields are from theOMEdatamodel
1687
.Bio-Formatsstandardizeseach format’s originalmetadatato and from the OME
data model so thatyou can work with a particular piece of metadata (e.g. physicalwidth of theimagein microns) in aformat-
independentway.
Of the473 fields documented in themetadatasummarytable:
• Thefileformatitself supports23 ofthem(4%).
• Ofthose, Bio-Formats fully or partially converts23 (100%).
Supported fields
Thesefieldsare fully supportedby theBio-FormatsImprovisionTIFF format reader:
• Channel:ID
1688
• Channel:Name1689
• Channel:SamplesPerPixel1690
• Image:AcquisitionDate
1691
• Image:Description
1692
• Image:ID
1693
• Image:Name
1694
• Pixels:BinDataBigEndian
1695
• Pixels:DimensionOrder
1696
• Pixels:ID
1697
• Pixels:PhysicalSizeX
1698
• Pixels:PhysicalSizeY
1699
• Pixels:PhysicalSizeZ
1700
• Pixels:SizeC1701
• Pixels:SizeT1702
• Pixels:SizeX
1703
• Pixels:SizeY
1704
• Pixels:SizeZ
1705
1687http://www.openmicroscopy.org/site/support/ome-model/
1688http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_ID
1689http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_Name
1690http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_SamplesPerPixel
1691http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_AcquisitionDate
1692http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Description
1693http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_ID
1694http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Name
1695http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/BinaryFile_xsd.html#BinData_BigEndian
1696http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_DimensionOrder
1697http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_ID
1698http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeX
1699http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeY
1700
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeZ
1701
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeC
1702
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeT
1703
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeX
1704
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeY
1705
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeZ
19.2. Metadata fields
275
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• Pixels:TimeIncrement
1706
• Pixels:Type
1707
• Plane:TheC1708
• Plane:TheT1709
• Plane:TheZ
1710
Totalsupported: 23
Totalunknown ormissing: 450
19.2.46 InCellReader
This page listssupported metadata fields for theBio-Formats InCell 1000/2000 formatreader.
Thesefields are from theOMEdatamodel
1711
.Bio-Formatsstandardizeseach format’s originalmetadatato and from the OME
data model so thatyou can work with a particular piece of metadata (e.g. physicalwidth of theimagein microns) in aformat-
independentway.
Of the473 fields documented in themetadatasummarytable:
• Thefileformatitself supports65 ofthem(13%).
• Ofthose, Bio-Formats fully or partially converts65 (100%).
Supported fields
Thesefieldsare fully supportedby theBio-FormatsInCell1000/2000 formatreader:
• Channel:EmissionWavelength
1712
• Channel:ExcitationWavelength
1713
• Channel:ID
1714
• Channel:Name
1715
• Channel:SamplesPerPixel
1716
• Detector:ID
1717
• Detector:Model
1718
• Detector:Type
1719
• DetectorSettings:Binning1720
• DetectorSettings:Gain1721
• DetectorSettings:ID
1722
• Experiment:ID
1723
1706
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_TimeIncrement
1707
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_Type
1708
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheC
1709
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheT
1710
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheZ
1711
http://www.openmicroscopy.org/site/support/ome-model/
1712
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_EmissionWavelength
1713
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_ExcitationWavelength
1714
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_ID
1715
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_Name
1716
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_SamplesPerPixel
1717
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Detector_ID
1718http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#ManufacturerSpec_Model
1719http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Detector_Type
1720http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#DetectorSettings_Binning
1721http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#DetectorSettings_Gain
1722
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#DetectorSettings_ID
1723
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Experiment_ID
19.2. Metadata fields
276
C# PDF File Compress Library: Compress reduce PDF size in C#.net
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• Experiment:Type
1724
• Image:AcquisitionDate
1725
• Image:Description1726
• Image:ExperimentRef1727
• Image:ID
1728
• Image:InstrumentRef
1729
• Image:Name
1730
• ImagingEnvironment:Temperature
1731
• Instrument:ID
1732
• Objective:Correction
1733
• Objective:ID
1734
• Objective:Immersion
1735
• Objective:LensNA
1736
• Objective:Manufacturer
1737
• Objective:NominalMagnification1738
• ObjectiveSettings:ID1739
• ObjectiveSettings:RefractiveIndex
1740
• Pixels:BinDataBigEndian
1741
• Pixels:DimensionOrder
1742
• Pixels:ID
1743
• Pixels:PhysicalSizeX
1744
• Pixels:PhysicalSizeY
1745
• Pixels:SizeC
1746
• Pixels:SizeT
1747
• Pixels:SizeX
1748
• Pixels:SizeY1749
1724
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Experiment_Type
1725
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_AcquisitionDate
1726
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Description
1727
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#ExperimentRef_ID
1728
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_ID
1729http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#InstrumentRef_ID
1730http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Name
1731http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#ImagingEnvironment_Temperature
1732http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Instrument_ID
1733
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Objective_Correction
1734
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Objective_ID
1735
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Objective_Immersion
1736
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Objective_LensNA
1737
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#ManufacturerSpec_Manufacturer
1738
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Objective_NominalMagnification
1739
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#ObjectiveSettings_ID
1740
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#ObjectiveSettings_RefractiveIndex
1741
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/BinaryFile_xsd.html#BinData_BigEndian
1742
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_DimensionOrder
1743
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_ID
1744
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeX
1745
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeY
1746
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeC
1747http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeT
1748http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeX
1749http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeY
19.2. Metadata fields
277
C# TIFF: TIFF Editor SDK to Read & Manipulate TIFF File Using C#.
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• Pixels:SizeZ
1750
• Pixels:Type
1751
• Plane:DeltaT1752
• Plane:ExposureTime1753
• Plane:PositionX
1754
• Plane:PositionY
1755
• Plane:PositionZ
1756
• Plane:TheC
1757
• Plane:TheT
1758
• Plane:TheZ
1759
• Plate:ColumnNamingConvention
1760
• Plate:ID
1761
• Plate:Name
1762
• Plate:RowNamingConvention
1763
• Plate:WellOriginX1764
• Plate:WellOriginY1765
• PlateAcquisition:ID
1766
• PlateAcquisition:MaximumFieldCount
1767
• PlateAcquisition:WellSampleRef
1768
• Well:Column
1769
• Well:ID
1770
• Well:Row
1771
• WellSample:ID
1772
• WellSample:ImageRef
1773
• WellSample:Index
1774
• WellSample:PositionX1775
1750http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeZ
1751
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_Type
1752
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_DeltaT
1753
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_ExposureTime
1754
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_PositionX
1755
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_PositionY
1756
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_PositionZ
1757
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheC
1758
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheT
1759
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheZ
1760
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#Plate_ColumnNamingConvention
1761
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#Plate_ID
1762
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#Plate_Name
1763
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#Plate_RowNamingConvention
1764
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#Plate_WellOriginX
1765
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#Plate_WellOriginY
1766
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#PlateAcquisition_ID
1767
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#PlateAcquisition_MaximumFieldCount
1768
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#WellSampleRef_ID
1769
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#Well_Column
1770
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#Well_ID
1771http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#Well_Row
1772http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#WellSample_ID
1773http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#ImageRef_ID
1774
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#WellSample_Index
1775
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#WellSample_PositionX
19.2. Metadata fields
278
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• WellSample:PositionY
1776
Totalsupported: 65
Totalunknown ormissing: 408
19.2.47 InCell3000Reader
This page listssupported metadata fields for theBio-Formats InCell 3000 formatreader.
Thesefields are from theOMEdatamodel
1777
.Bio-Formatsstandardizeseach format’s originalmetadatato and from the OME
data model so thatyou can work with a particular piece of metadata (e.g. physicalwidth of theimagein microns) in aformat-
independentway.
Of the473 fields documented in themetadatasummarytable:
• Thefileformatitself supports17 ofthem(3%).
• Ofthose, Bio-Formats fully or partially converts17 (100%).
Supported fields
Thesefieldsare fully supportedby theBio-FormatsInCell3000 format reader:
• Channel:ID
1778
• Channel:SamplesPerPixel1779
• Image:AcquisitionDate1780
• Image:ID
1781
• Image:Name
1782
• Pixels:BinDataBigEndian
1783
• Pixels:DimensionOrder
1784
• Pixels:ID
1785
• Pixels:SizeC
1786
• Pixels:SizeT
1787
• Pixels:SizeX
1788
• Pixels:SizeY
1789
• Pixels:SizeZ1790
• Pixels:Type1791
• Plane:TheC
1792
• Plane:TheT
1793
1776
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#WellSample_PositionY
1777http://www.openmicroscopy.org/site/support/ome-model/
1778http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_ID
1779http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_SamplesPerPixel
1780
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_AcquisitionDate
1781
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_ID
1782
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Name
1783
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/BinaryFile_xsd.html#BinData_BigEndian
1784
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_DimensionOrder
1785
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_ID
1786
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeC
1787
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeT
1788
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeX
1789
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeY
1790
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeZ
1791
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_Type
1792http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheC
1793http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheT
19.2. Metadata fields
279
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• Plane:TheZ
1794
Totalsupported: 17
Totalunknown ormissing: 456
19.2.48 INRReader
This page listssupported metadata fields for theBio-Formats INRformatreader.
Thesefields are from theOMEdatamodel
1795
.Bio-Formatsstandardizeseach format’s originalmetadatato and from the OME
data model so thatyou can work with a particular piece of metadata (e.g. physicalwidth of theimagein microns) in aformat-
independentway.
Of the473 fields documented in themetadatasummarytable:
• Thefileformatitself supports20 ofthem(4%).
• Ofthose, Bio-Formats fully or partially converts20 (100%).
Supported fields
Thesefieldsare fully supportedby theBio-FormatsINR format reader:
• Channel:ID
1796
• Channel:SamplesPerPixel1797
• Image:AcquisitionDate1798
• Image:ID
1799
• Image:Name
1800
• Pixels:BinDataBigEndian
1801
• Pixels:DimensionOrder
1802
• Pixels:ID
1803
• Pixels:PhysicalSizeX
1804
• Pixels:PhysicalSizeY
1805
• Pixels:PhysicalSizeZ
1806
• Pixels:SizeC
1807
• Pixels:SizeT1808
• Pixels:SizeX1809
• Pixels:SizeY
1810
• Pixels:SizeZ
1811
1794http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheZ
1795
http://www.openmicroscopy.org/site/support/ome-model/
1796http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_ID
1797http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_SamplesPerPixel
1798http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_AcquisitionDate
1799http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_ID
1800
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Name
1801
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/BinaryFile_xsd.html#BinData_BigEndian
1802
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_DimensionOrder
1803
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_ID
1804
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeX
1805
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeY
1806
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeZ
1807
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeC
1808
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeT
1809
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeX
1810
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeY
1811
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeZ
19.2. Metadata fields
280
• Pixels:Type
1812
• Plane:TheC
1813
• Plane:TheT1814
• Plane:TheZ1815
Totalsupported: 20
Totalunknown ormissing: 453
19.2.49 IvisionReader
This page listssupported metadata fields for theBio-Formats IVision formatreader.
Thesefields are from theOMEdatamodel
1816
.Bio-Formatsstandardizeseach format’s originalmetadatato and from the OME
data model so thatyou can work with a particular piece of metadata (e.g. physicalwidth of theimagein microns) in aformat-
independentway.
Of the473 fields documented in themetadatasummarytable:
• Thefileformatitself supports32 ofthem(6%).
• Ofthose, Bio-Formats fully or partially converts32 (100%).
Supported fields
Thesefieldsare fully supportedby theBio-FormatsIVision format reader:
• Channel:ID
1817
• Channel:SamplesPerPixel
1818
• Detector:ID
1819
• Detector:Type
1820
• DetectorSettings:Binning
1821
• DetectorSettings:Gain
1822
• DetectorSettings:ID
1823
• Image:AcquisitionDate
1824
• Image:ID
1825
• Image:InstrumentRef1826
• Image:Name1827
• Instrument:ID
1828
• Objective:Correction
1829
1812
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_Type
1813
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheC
1814
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheT
1815
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheZ
1816
http://www.openmicroscopy.org/site/support/ome-model/
1817
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_ID
1818
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_SamplesPerPixel
1819
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Detector_ID
1820
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Detector_Type
1821
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#DetectorSettings_Binning
1822
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#DetectorSettings_Gain
1823
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#DetectorSettings_ID
1824http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_AcquisitionDate
1825http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_ID
1826http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#InstrumentRef_ID
1827http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Name
1828http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Instrument_ID
1829
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Objective_Correction
19.2. Metadata fields
281
• Objective:ID
1830
• Objective:Immersion
1831
• Objective:LensNA1832
• Objective:NominalMagnification1833
• ObjectiveSettings:ID
1834
• ObjectiveSettings:RefractiveIndex
1835
• Pixels:BinDataBigEndian
1836
• Pixels:DimensionOrder
1837
• Pixels:ID
1838
• Pixels:SizeC
1839
• Pixels:SizeT
1840
• Pixels:SizeX
1841
• Pixels:SizeY
1842
• Pixels:SizeZ
1843
• Pixels:TimeIncrement1844
• Pixels:Type1845
• Plane:TheC
1846
• Plane:TheT
1847
• Plane:TheZ
1848
Totalsupported: 32
Totalunknown ormissing: 441
19.2.50 IPLabReader
This page listssupported metadata fields for theBio-Formats IPLab formatreader.
Thesefields are from theOMEdatamodel1849. Bio-Formatsstandardizeseach format’s originalmetadatato and from the OME
data model so thatyou can work with a particular piece of metadata (e.g. physicalwidth of theimagein microns) in aformat-
independentway.
Of the473 fields documented in themetadatasummarytable:
• Thefileformatitself supports29 ofthem(6%).
• Ofthose, Bio-Formats fully or partially converts29 (100%).
1830
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Objective_ID
1831
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Objective_Immersion
1832
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Objective_LensNA
1833
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Objective_NominalMagnification
1834
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#ObjectiveSettings_ID
1835
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#ObjectiveSettings_RefractiveIndex
1836
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/BinaryFile_xsd.html#BinData_BigEndian
1837
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_DimensionOrder
1838
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_ID
1839
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeC
1840http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeT
1841http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeX
1842http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeY
1843
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeZ
1844
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_TimeIncrement
1845
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_Type
1846
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheC
1847
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheT
1848
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheZ
1849
http://www.openmicroscopy.org/site/support/ome-model/
19.2. Metadata fields
282
Supported fields
Thesefieldsare fully supportedby theBio-FormatsIPLab format reader:
• Channel:ID
1850
• Channel:SamplesPerPixel
1851
• Image:AcquisitionDate
1852
• Image:Description
1853
• Image:ID
1854
• Image:Name
1855
• Image:ROIRef
1856
• Pixels:BinDataBigEndian1857
• Pixels:DimensionOrder1858
• Pixels:ID
1859
• Pixels:PhysicalSizeX
1860
• Pixels:PhysicalSizeY
1861
• Pixels:SizeC
1862
• Pixels:SizeT
1863
• Pixels:SizeX
1864
• Pixels:SizeY
1865
• Pixels:SizeZ
1866
• Pixels:TimeIncrement
1867
• Pixels:Type1868
• Plane:DeltaT1869
• Plane:TheC
1870
• Plane:TheT
1871
• Plane:TheZ
1872
• ROI:ID
1873
1850http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_ID
1851http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_SamplesPerPixel
1852http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_AcquisitionDate
1853http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Description
1854http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_ID
1855http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Name
1856http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ROI_xsd.html#ROIRef_ID
1857
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/BinaryFile_xsd.html#BinData_BigEndian
1858
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_DimensionOrder
1859
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_ID
1860
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeX
1861
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeY
1862
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeC
1863
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeT
1864http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeX
1865
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeY
1866
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeZ
1867http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_TimeIncrement
1868http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_Type
1869http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_DeltaT
1870http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheC
1871http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheT
1872
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheZ
1873
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ROI_xsd.html#ROI_ID
19.2. Metadata fields
283
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