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19.2.65 MetamorphTiffReader
This page listssupported metadata fields for theBio-Formats Metamorph TIFFformatreader.
Thesefields are from theOMEdatamodel
2279
.Bio-Formatsstandardizeseach format’s originalmetadatato and from the OME
data model so thatyou can work with a particular piece of metadata (e.g. physicalwidth of theimagein microns) in aformat-
independentway.
Of the473 fields documented in themetadatasummarytable:
• Thefileformatitself supports36 ofthem(7%).
• Ofthose, Bio-Formats fully or partially converts36 (100%).
Supported fields
Thesefieldsare fully supportedby theBio-FormatsMetamorph TIFFformatreader:
• Channel:ID
2280
• Channel:Name2281
• Channel:SamplesPerPixel2282
• Image:AcquisitionDate
2283
• Image:Description
2284
• Image:ID
2285
• Image:Name
2286
• ImagingEnvironment:Temperature
2287
• Pixels:BinDataBigEndian
2288
• Pixels:DimensionOrder
2289
• Pixels:ID
2290
• Pixels:PhysicalSizeX
2291
• Pixels:PhysicalSizeY
2292
• Pixels:PhysicalSizeZ2293
• Pixels:SizeC2294
• Pixels:SizeT
2295
• Pixels:SizeX
2296
• Pixels:SizeY
2297
2279http://www.openmicroscopy.org/site/support/ome-model/
2280http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_ID
2281
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_Name
2282
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_SamplesPerPixel
2283
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_AcquisitionDate
2284
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Description
2285
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_ID
2286
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Name
2287
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#ImagingEnvironment_Temperature
2288
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/BinaryFile_xsd.html#BinData_BigEndian
2289
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_DimensionOrder
2290
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_ID
2291
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeX
2292
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeY
2293http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeZ
2294http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeC
2295http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeT
2296http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeX
2297http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeY
19.2. Metadata fields
304
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• Pixels:SizeZ
2298
• Pixels:Type
2299
• Plane:DeltaT2300
• Plane:ExposureTime2301
• Plane:PositionX
2302
• Plane:PositionY
2303
• Plane:TheC
2304
• Plane:TheT
2305
• Plane:TheZ
2306
• Plate:ColumnNamingConvention
2307
• Plate:ID
2308
• Plate:RowNamingConvention
2309
• Well:Column
2310
• Well:ID
2311
• Well:Row2312
• WellSample:ID2313
• WellSample:ImageRef
2314
• WellSample:Index
2315
Totalsupported: 36
Totalunknown ormissing: 437
19.2.66 MetamorphReader
This page listssupported metadata fields for theBio-Formats Metamorph STK formatreader.
Thesefields are from theOMEdatamodel
2316
.Bio-Formatsstandardizeseach format’s originalmetadatato and from the OME
data model so thatyou can work with a particular piece of metadata (e.g. physicalwidth of theimagein microns) in aformat-
independentway.
Of the473 fields documented in themetadatasummarytable:
• Thefileformatitself supports41 ofthem(8%).
• Ofthose, Bio-Formats fully or partially converts41 (100%).
2298
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeZ
2299
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_Type
2300
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_DeltaT
2301
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_ExposureTime
2302
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_PositionX
2303
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_PositionY
2304
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheC
2305
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheT
2306
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheZ
2307
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#Plate_ColumnNamingConvention
2308
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#Plate_ID
2309http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#Plate_RowNamingConvention
2310http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#Well_Column
2311http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#Well_ID
2312
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#Well_Row
2313
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#WellSample_ID
2314
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#ImageRef_ID
2315
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#WellSample_Index
2316
http://www.openmicroscopy.org/site/support/ome-model/
19.2. Metadata fields
305
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Supported fields
Thesefieldsare fully supportedby theBio-FormatsMetamorph STKformatreader:
• Channel:ID
2317
• Channel:LightSourceSettingsID
2318
• Channel:LightSourceSettingsWavelength
2319
• Channel:Name
2320
• Channel:SamplesPerPixel
2321
• Detector:ID
2322
• Detector:Type
2323
• DetectorSettings:Binning2324
• DetectorSettings:Gain2325
• DetectorSettings:ID
2326
• DetectorSettings:ReadOutRate
2327
• Image:AcquisitionDate
2328
• Image:Description
2329
• Image:ID
2330
• Image:InstrumentRef
2331
• Image:Name
2332
• ImagingEnvironment:Temperature
2333
• Instrument:ID
2334
• Laser:ID2335
• Laser:LaserMedium2336
• Laser:Type
2337
• Pixels:BinDataBigEndian
2338
• Pixels:DimensionOrder
2339
• Pixels:ID
2340
2317
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_ID
2318
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#LightSourceSettings_ID
2319
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#LightSourceSettings_Wavelength
2320
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_Name
2321
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_SamplesPerPixel
2322
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Detector_ID
2323
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Detector_Type
2324
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#DetectorSettings_Binning
2325
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#DetectorSettings_Gain
2326
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#DetectorSettings_ID
2327
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#DetectorSettings_ReadOutRate
2328
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_AcquisitionDate
2329http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Description
2330http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_ID
2331http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#InstrumentRef_ID
2332http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Name
2333
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#ImagingEnvironment_Temperature
2334
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Instrument_ID
2335
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#LightSource_ID
2336
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Laser_LaserMedium
2337
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Laser_Type
2338
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/BinaryFile_xsd.html#BinData_BigEndian
2339
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_DimensionOrder
2340
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_ID
19.2. Metadata fields
306
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• Pixels:PhysicalSizeX
2341
• Pixels:PhysicalSizeY
2342
• Pixels:PhysicalSizeZ2343
• Pixels:SizeC2344
• Pixels:SizeT
2345
• Pixels:SizeX
2346
• Pixels:SizeY
2347
• Pixels:SizeZ
2348
• Pixels:Type
2349
• Plane:DeltaT
2350
• Plane:ExposureTime
2351
• Plane:PositionX
2352
• Plane:PositionY
2353
• Plane:PositionZ
2354
• Plane:TheC2355
• Plane:TheT2356
• Plane:TheZ
2357
Totalsupported: 41
Totalunknown ormissing: 432
19.2.67 MIASReader
This page listssupported metadata fields for theBio-Formats MIAS formatreader.
Thesefields are from theOMEdatamodel
2358
.Bio-Formatsstandardizeseach format’s originalmetadatato and from the OME
data model so thatyou can work with a particular piece of metadata (e.g. physicalwidth of theimagein microns) in aformat-
independentway.
Of the473 fields documented in themetadatasummarytable:
• Thefileformatitself supports62 ofthem(13%).
• Ofthose, Bio-Formats fully or partially converts62 (100%).
2341
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeX
2342
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeY
2343
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeZ
2344
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeC
2345
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeT
2346
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeX
2347
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeY
2348
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeZ
2349
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_Type
2350
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_DeltaT
2351
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_ExposureTime
2352
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_PositionX
2353
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_PositionY
2354
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_PositionZ
2355
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheC
2356
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheT
2357
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheZ
2358
http://www.openmicroscopy.org/site/support/ome-model/
19.2. Metadata fields
307
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Supported fields
Thesefieldsare fully supportedby theBio-FormatsMIASformat reader:
• Channel:Color
2359
• Channel:ID
2360
• Channel:Name
2361
• Channel:SamplesPerPixel
2362
• Ellipse:ID
2363
• Ellipse:RadiusX
2364
• Ellipse:RadiusY
2365
• Ellipse:Text2366
• Ellipse:TheT2367
• Ellipse:TheZ
2368
• Ellipse:X
2369
• Ellipse:Y
2370
• Experiment:Description
2371
• Experiment:ID
2372
• Experiment:Type
2373
• Image:AcquisitionDate
2374
• Image:ExperimentRef
2375
• Image:ID
2376
• Image:InstrumentRef2377
• Image:Name2378
• Image:ROIRef
2379
• Instrument:ID
2380
• Mask:FillColor
2381
• Mask:Height
2382
2359
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_Color
2360
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_ID
2361
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_Name
2362
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_SamplesPerPixel
2363
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ROI_xsd.html#Shape_ID
2364
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ROI_xsd.html#Ellipse_RadiusX
2365
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ROI_xsd.html#Ellipse_RadiusY
2366
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ROI_xsd.html#Shape_Text
2367
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ROI_xsd.html#Shape_TheT
2368
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ROI_xsd.html#Shape_TheZ
2369
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ROI_xsd.html#Ellipse_X
2370
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ROI_xsd.html#Ellipse_Y
2371
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Experiment_Description
2372
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Experiment_ID
2373
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Experiment_Type
2374
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_AcquisitionDate
2375
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#ExperimentRef_ID
2376
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_ID
2377
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#InstrumentRef_ID
2378http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Name
2379http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ROI_xsd.html#ROIRef_ID
2380http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Instrument_ID
2381
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ROI_xsd.html#Shape_FillColor
2382
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ROI_xsd.html#Mask_Height
19.2. Metadata fields
308
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• Mask:ID
2383
• Mask:StrokeColor
2384
• Mask:Width2385
• Mask:X2386
• Mask:Y
2387
• Objective:ID
2388
• Objective:Model
2389
• Objective:NominalMagnification
2390
• Pixels:BinDataBigEndian
2391
• Pixels:DimensionOrder
2392
• Pixels:ID
2393
• Pixels:PhysicalSizeX
2394
• Pixels:PhysicalSizeY
2395
• Pixels:SizeC
2396
• Pixels:SizeT2397
• Pixels:SizeX2398
• Pixels:SizeY
2399
• Pixels:SizeZ
2400
• Pixels:Type
2401
• Plane:ExposureTime
2402
• Plane:TheC
2403
• Plane:TheT
2404
• Plane:TheZ
2405
• Plate:ColumnNamingConvention
2406
• Plate:ExternalIdentifier
2407
• Plate:ID2408
2383
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ROI_xsd.html#Shape_ID
2384
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ROI_xsd.html#Shape_StrokeColor
2385
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ROI_xsd.html#Mask_Width
2386
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ROI_xsd.html#Mask_X
2387
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ROI_xsd.html#Mask_Y
2388http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Objective_ID
2389http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#ManufacturerSpec_Model
2390http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Objective_NominalMagnification
2391
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/BinaryFile_xsd.html#BinData_BigEndian
2392
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_DimensionOrder
2393
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_ID
2394
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeX
2395
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeY
2396
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeC
2397
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeT
2398
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeX
2399
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeY
2400
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeZ
2401
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_Type
2402
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_ExposureTime
2403http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheC
2404http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheT
2405http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheZ
2406http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#Plate_ColumnNamingConvention
2407http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#Plate_ExternalIdentifier
2408
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#Plate_ID
19.2. Metadata fields
309
• Plate:Name
2409
• Plate:RowNamingConvention
2410
• PlateAcquisition:ID2411
• PlateAcquisition:MaximumFieldCount2412
• PlateAcquisition:WellSampleRef
2413
• ROI:ID
2414
• Well:Column
2415
• Well:ID
2416
• Well:Row
2417
• WellSample:ID
2418
• WellSample:ImageRef
2419
• WellSample:Index
2420
Totalsupported: 62
Totalunknown ormissing: 411
19.2.68 MicromanagerReader
This page listssupported metadata fields for theBio-Formats Micro-Manager formatreader.
Thesefields are from theOMEdatamodel
2421
.Bio-Formatsstandardizeseach format’s originalmetadatato and from the OME
data model so thatyou can work with a particular piece of metadata (e.g. physicalwidth of theimagein microns) in aformat-
independentway.
Of the473 fields documented in themetadatasummarytable:
• Thefileformatitself supports36 ofthem(7%).
• Ofthose, Bio-Formats fully or partially converts36 (100%).
Supported fields
Thesefieldsare fully supportedby theBio-FormatsMicro-Managerformat reader:
• Channel:ID
2422
• Channel:Name2423
• Channel:SamplesPerPixel2424
• Detector:ID
2425
• Detector:Manufacturer
2426
2409http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#Plate_Name
2410http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#Plate_RowNamingConvention
2411http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#PlateAcquisition_ID
2412
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#PlateAcquisition_MaximumFieldCount
2413
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#WellSampleRef_ID
2414
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ROI_xsd.html#ROI_ID
2415
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#Well_Column
2416
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#Well_ID
2417
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#Well_Row
2418
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#WellSample_ID
2419
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#ImageRef_ID
2420
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#WellSample_Index
2421
http://www.openmicroscopy.org/site/support/ome-model/
2422
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_ID
2423
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_Name
2424http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_SamplesPerPixel
2425http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Detector_ID
2426http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#ManufacturerSpec_Manufacturer
19.2. Metadata fields
310
• Detector:Model
2427
• Detector:SerialNumber
2428
• Detector:Type2429
• DetectorSettings:Binning2430
• DetectorSettings:Gain
2431
• DetectorSettings:ID
2432
• DetectorSettings:Voltage
2433
• Image:AcquisitionDate
2434
• Image:Description
2435
• Image:ID
2436
• Image:InstrumentRef
2437
• Image:Name
2438
• ImagingEnvironment:Temperature
2439
• Instrument:ID
2440
• Pixels:BinDataBigEndian2441
• Pixels:DimensionOrder2442
• Pixels:ID
2443
• Pixels:PhysicalSizeX
2444
• Pixels:PhysicalSizeY
2445
• Pixels:PhysicalSizeZ
2446
• Pixels:SizeC
2447
• Pixels:SizeT
2448
• Pixels:SizeX
2449
• Pixels:SizeY
2450
• Pixels:SizeZ
2451
• Pixels:Type2452
2427http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#ManufacturerSpec_Model
2428http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#ManufacturerSpec_SerialNumber
2429http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Detector_Type
2430
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#DetectorSettings_Binning
2431
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#DetectorSettings_Gain
2432
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#DetectorSettings_ID
2433
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#DetectorSettings_Voltage
2434
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_AcquisitionDate
2435
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Description
2436
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_ID
2437
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#InstrumentRef_ID
2438
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Name
2439
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#ImagingEnvironment_Temperature
2440
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Instrument_ID
2441
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/BinaryFile_xsd.html#BinData_BigEndian
2442http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_DimensionOrder
2443http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_ID
2444http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeX
2445http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeY
2446http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeZ
2447
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeC
2448
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeT
2449
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeX
2450
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeY
2451
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeZ
2452
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_Type
19.2. Metadata fields
311
• Plane:DeltaT
2453
• Plane:ExposureTime
2454
• Plane:TheC2455
• Plane:TheT2456
• Plane:TheZ
2457
Totalsupported: 36
Totalunknown ormissing: 437
19.2.69 MINCReader
This page listssupported metadata fields for theBio-Formats MINCMRI formatreader.
Thesefields are from theOMEdatamodel
2458
.Bio-Formatsstandardizeseach format’s originalmetadatato and from the OME
data model so thatyou can work with a particular piece of metadata (e.g. physicalwidth of theimagein microns) in aformat-
independentway.
Of the473 fields documented in themetadatasummarytable:
• Thefileformatitself supports21 ofthem(4%).
• Ofthose, Bio-Formats fully or partially converts21 (100%).
Supported fields
Thesefieldsare fully supportedby theBio-FormatsMINCMRIformat reader:
• Channel:ID
2459
• Channel:SamplesPerPixel
2460
• Image:AcquisitionDate
2461
• Image:Description
2462
• Image:ID
2463
• Image:Name
2464
• Pixels:BinDataBigEndian
2465
• Pixels:DimensionOrder
2466
• Pixels:ID2467
• Pixels:PhysicalSizeX2468
• Pixels:PhysicalSizeY
2469
• Pixels:PhysicalSizeZ
2470
2453http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_DeltaT
2454http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_ExposureTime
2455http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheC
2456http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheT
2457http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheZ
2458http://www.openmicroscopy.org/site/support/ome-model/
2459http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_ID
2460http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_SamplesPerPixel
2461http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_AcquisitionDate
2462http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Description
2463http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_ID
2464http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Name
2465http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/BinaryFile_xsd.html#BinData_BigEndian
2466http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_DimensionOrder
2467http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_ID
2468http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeX
2469http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeY
2470
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeZ
19.2. Metadata fields
312
• Pixels:SizeC
2471
• Pixels:SizeT
2472
• Pixels:SizeX2473
• Pixels:SizeY2474
• Pixels:SizeZ
2475
• Pixels:Type
2476
• Plane:TheC
2477
• Plane:TheT
2478
• Plane:TheZ
2479
Totalsupported: 21
Totalunknown ormissing: 452
19.2.70 MRWReader
This page listssupported metadata fields for theBio-Formats MinoltaMRW formatreader.
Thesefields are from theOMEdatamodel2480. Bio-Formatsstandardizeseach format’s originalmetadatato and from the OME
data model so thatyou can work with a particular piece of metadata (e.g. physicalwidth of theimagein microns) in aformat-
independentway.
Of the473 fields documented in themetadatasummarytable:
• Thefileformatitself supports17 ofthem(3%).
• Ofthose, Bio-Formats fully or partially converts17 (100%).
Supported fields
Thesefieldsare fully supportedby theBio-FormatsMinolta MRW format reader:
• Channel:ID
2481
• Channel:SamplesPerPixel
2482
• Image:AcquisitionDate
2483
• Image:ID
2484
• Image:Name2485
• Pixels:BinDataBigEndian2486
• Pixels:DimensionOrder
2487
• Pixels:ID
2488
2471http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeC
2472http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeT
2473http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeX
2474
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeY
2475
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeZ
2476
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_Type
2477
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheC
2478
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheT
2479
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheZ
2480
http://www.openmicroscopy.org/site/support/ome-model/
2481
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_ID
2482
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_SamplesPerPixel
2483
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_AcquisitionDate
2484
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_ID
2485
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Name
2486
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/BinaryFile_xsd.html#BinData_BigEndian
2487
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_DimensionOrder
2488http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_ID
19.2. Metadata fields
313
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