19.2.90 OperettaReader
This page listssupported metadata fields for theBio-Formats PerkinElmer Operettaformatreader.
Thesefields are from theOMEdatamodel
3112
.Bio-Formatsstandardizeseach format’s originalmetadatato and from the OME
data model so thatyou can work with a particular piece of metadata (e.g. physicalwidth of theimagein microns) in aformat-
independentway.
Of the473 fields documented in themetadatasummarytable:
• Thefileformatitself supports41 ofthem(8%).
• Ofthose, Bio-Formats fully or partially converts41 (100%).
Supported fields
Thesefieldsare fully supportedby theBio-FormatsPerkinElmerOperetta format reader:
• Channel:ID
3113
• Channel:Name3114
• Channel:SamplesPerPixel3115
• Experimenter:ID
3116
• Experimenter:LastName
3117
• Image:AcquisitionDate
3118
• Image:ExperimenterRef
3119
• Image:ID
3120
• Image:Name
3121
• Pixels:BinDataBigEndian
3122
• Pixels:DimensionOrder
3123
• Pixels:ID
3124
• Pixels:PhysicalSizeX
3125
• Pixels:PhysicalSizeY3126
• Pixels:SizeC3127
• Pixels:SizeT
3128
• Pixels:SizeX
3129
• Pixels:SizeY
3130
3112http://www.openmicroscopy.org/site/support/ome-model/
3113http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_ID
3114
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_Name
3115
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_SamplesPerPixel
3116
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Experimenter_ID
3117
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Experimenter_LastName
3118
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_AcquisitionDate
3119
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#ExperimenterRef_ID
3120
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_ID
3121
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Name
3122
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/BinaryFile_xsd.html#BinData_BigEndian
3123
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_DimensionOrder
3124
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_ID
3125
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeX
3126
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeY
3127
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeC
3128http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeT
3129http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeX
3130http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeY
19.2. Metadata fields
344
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• Pixels:SizeZ
3131
• Pixels:Type
3132
• Plane:PositionX3133
• Plane:PositionY3134
• Plane:PositionZ
3135
• Plane:TheC
3136
• Plane:TheT
3137
• Plane:TheZ
3138
• Plate:Columns
3139
• Plate:Description
3140
• Plate:ExternalIdentifier
3141
• Plate:ID
3142
• Plate:Name
3143
• Plate:Rows
3144
• PlateAcquisition:ID3145
• PlateAcquisition:MaximumFieldCount3146
• PlateAcquisition:WellSampleRef
3147
• Well:Column
3148
• Well:ID
3149
• Well:Row
3150
• WellSample:ID
3151
• WellSample:ImageRef
3152
• WellSample:Index
3153
Totalsupported: 41
Totalunknown ormissing: 432
3131http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeZ
3132http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_Type
3133
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_PositionX
3134
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_PositionY
3135
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_PositionZ
3136
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheC
3137
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheT
3138
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheZ
3139
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#Plate_Columns
3140
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#Plate_Description
3141
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#Plate_ExternalIdentifier
3142
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#Plate_ID
3143
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#Plate_Name
3144
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#Plate_Rows
3145
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#PlateAcquisition_ID
3146
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#PlateAcquisition_MaximumFieldCount
3147http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#WellSampleRef_ID
3148http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#Well_Column
3149http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#Well_ID
3150http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#Well_Row
3151http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#WellSample_ID
3152http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#ImageRef_ID
3153http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/SPW_xsd.html#WellSample_Index
19.2. Metadata fields
345
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19.2.91 PerkinElmerReader
This page listssupported metadata fields for theBio-Formats PerkinElmer formatreader.
Thesefields are from theOMEdatamodel
3154
.Bio-Formatsstandardizeseach format’s originalmetadatato and from the OME
data model so thatyou can work with a particular piece of metadata (e.g. physicalwidth of theimagein microns) in aformat-
independentway.
Of the473 fields documented in themetadatasummarytable:
• Thefileformatitself supports28 ofthem(5%).
• Ofthose, Bio-Formats fully or partially converts28 (100%).
Supported fields
Thesefieldsare fully supportedby theBio-FormatsPerkinElmerformat reader:
• Channel:EmissionWavelength
3155
• Channel:ExcitationWavelength3156
• Channel:ID3157
• Channel:SamplesPerPixel
3158
• Image:AcquisitionDate
3159
• Image:ID
3160
• Image:InstrumentRef
3161
• Image:Name
3162
• Instrument:ID
3163
• Pixels:BinDataBigEndian
3164
• Pixels:DimensionOrder
3165
• Pixels:ID
3166
• Pixels:PhysicalSizeX
3167
• Pixels:PhysicalSizeY3168
• Pixels:SizeC3169
• Pixels:SizeT
3170
• Pixels:SizeX
3171
• Pixels:SizeY
3172
3154http://www.openmicroscopy.org/site/support/ome-model/
3155http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_EmissionWavelength
3156http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_ExcitationWavelength
3157http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_ID
3158
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_SamplesPerPixel
3159
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_AcquisitionDate
3160
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_ID
3161
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#InstrumentRef_ID
3162http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Name
3163http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Instrument_ID
3164http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/BinaryFile_xsd.html#BinData_BigEndian
3165http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_DimensionOrder
3166http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_ID
3167http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeX
3168http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeY
3169http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeC
3170http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeT
3171http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeX
3172
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeY
19.2. Metadata fields
346
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• Pixels:SizeZ
3173
• Pixels:Type
3174
• Plane:DeltaT3175
• Plane:ExposureTime3176
• Plane:PositionX
3177
• Plane:PositionY
3178
• Plane:PositionZ
3179
• Plane:TheC
3180
• Plane:TheT
3181
• Plane:TheZ
3182
Totalsupported: 28
Totalunknown ormissing: 445
19.2.92 PGMReader
This page listssupported metadata fields for theBio-Formats Portable Gray Map formatreader.
Thesefields are from theOMEdatamodel
3183
.Bio-Formatsstandardizeseach format’s originalmetadatato and from the OME
data model so thatyou can work with a particular piece of metadata (e.g. physicalwidth of theimagein microns) in aformat-
independentway.
Of the473 fields documented in themetadatasummarytable:
• Thefileformatitself supports17 ofthem(3%).
• Ofthose, Bio-Formats fully or partially converts17 (100%).
Supported fields
Thesefieldsare fully supportedby theBio-FormatsPortableGray Mapformatreader:
• Channel:ID
3184
• Channel:SamplesPerPixel
3185
• Image:AcquisitionDate
3186
• Image:ID3187
• Image:Name3188
• Pixels:BinDataBigEndian
3189
• Pixels:DimensionOrder
3190
3173http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeZ
3174http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_Type
3175http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_DeltaT
3176http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_ExposureTime
3177http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_PositionX
3178http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_PositionY
3179
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_PositionZ
3180
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheC
3181
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheT
3182
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheZ
3183
http://www.openmicroscopy.org/site/support/ome-model/
3184
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_ID
3185
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_SamplesPerPixel
3186
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_AcquisitionDate
3187
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_ID
3188
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Name
3189
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/BinaryFile_xsd.html#BinData_BigEndian
3190
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_DimensionOrder
19.2. Metadata fields
347
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• Pixels:ID
3191
• Pixels:SizeC
3192
• Pixels:SizeT3193
• Pixels:SizeX3194
• Pixels:SizeY
3195
• Pixels:SizeZ
3196
• Pixels:Type
3197
• Plane:TheC
3198
• Plane:TheT
3199
• Plane:TheZ
3200
Totalsupported: 17
Totalunknown ormissing: 456
19.2.93 PSDReader
This page listssupported metadata fields for theBio-Formats AdobePhotoshop formatreader.
Thesefields are from theOMEdatamodel
3201
.Bio-Formatsstandardizeseach format’s originalmetadatato and from the OME
data model so thatyou can work with a particular piece of metadata (e.g. physicalwidth of theimagein microns) in aformat-
independentway.
Of the473 fields documented in themetadatasummarytable:
• Thefileformatitself supports17 ofthem(3%).
• Ofthose, Bio-Formats fully or partially converts17 (100%).
Supported fields
Thesefieldsare fully supportedby theBio-FormatsAdobePhotoshopformatreader:
• Channel:ID
3202
• Channel:SamplesPerPixel
3203
• Image:AcquisitionDate
3204
• Image:ID3205
• Image:Name3206
• Pixels:BinDataBigEndian
3207
• Pixels:DimensionOrder
3208
3191http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_ID
3192http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeC
3193http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeT
3194http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeX
3195http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeY
3196http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeZ
3197
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_Type
3198
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheC
3199
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheT
3200
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheZ
3201
http://www.openmicroscopy.org/site/support/ome-model/
3202
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_ID
3203
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_SamplesPerPixel
3204
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_AcquisitionDate
3205
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_ID
3206
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Name
3207
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/BinaryFile_xsd.html#BinData_BigEndian
3208
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_DimensionOrder
19.2. Metadata fields
348
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• Pixels:ID
3209
• Pixels:SizeC
3210
• Pixels:SizeT3211
• Pixels:SizeX3212
• Pixels:SizeY
3213
• Pixels:SizeZ
3214
• Pixels:Type
3215
• Plane:TheC
3216
• Plane:TheT
3217
• Plane:TheZ
3218
Totalsupported: 17
Totalunknown ormissing: 456
19.2.94 PhotoshopTiffReader
This page listssupported metadata fields for theBio-Formats AdobePhotoshop TIFFformatreader.
Thesefields are from theOMEdatamodel
3219
.Bio-Formatsstandardizeseach format’s originalmetadatato and from the OME
data model so thatyou can work with a particular piece of metadata (e.g. physicalwidth of theimagein microns) in aformat-
independentway.
Of the473 fields documented in themetadatasummarytable:
• Thefileformatitself supports17 ofthem(3%).
• Ofthose, Bio-Formats fully or partially converts17 (100%).
Supported fields
Thesefieldsare fully supportedby theBio-FormatsAdobePhotoshopTIFF format reader:
• Channel:ID
3220
• Channel:SamplesPerPixel
3221
• Image:AcquisitionDate
3222
• Image:ID3223
• Image:Name3224
• Pixels:BinDataBigEndian
3225
• Pixels:DimensionOrder
3226
3209http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_ID
3210http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeC
3211http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeT
3212http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeX
3213
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeY
3214
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeZ
3215
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_Type
3216
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheC
3217
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheT
3218
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheZ
3219
http://www.openmicroscopy.org/site/support/ome-model/
3220
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_ID
3221
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_SamplesPerPixel
3222
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_AcquisitionDate
3223
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_ID
3224
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Name
3225
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/BinaryFile_xsd.html#BinData_BigEndian
3226
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_DimensionOrder
19.2. Metadata fields
349
• Pixels:ID
3227
• Pixels:SizeC
3228
• Pixels:SizeT3229
• Pixels:SizeX3230
• Pixels:SizeY
3231
• Pixels:SizeZ
3232
• Pixels:Type
3233
• Plane:TheC
3234
• Plane:TheT
3235
• Plane:TheZ
3236
Totalsupported: 17
Totalunknown ormissing: 456
19.2.95 PictReader
This page listssupported metadata fields for theBio-Formats PICTformatreader.
Thesefields are from theOMEdatamodel
3237
.Bio-Formatsstandardizeseach format’s originalmetadatato and from the OME
data model so thatyou can work with a particular piece of metadata (e.g. physicalwidth of theimagein microns) in aformat-
independentway.
Of the473 fields documented in themetadatasummarytable:
• Thefileformatitself supports17 ofthem(3%).
• Ofthose, Bio-Formats fully or partially converts17 (100%).
Supported fields
Thesefieldsare fully supportedby theBio-FormatsPICT format reader:
• Channel:ID
3238
• Channel:SamplesPerPixel
3239
• Image:AcquisitionDate
3240
• Image:ID3241
• Image:Name3242
• Pixels:BinDataBigEndian
3243
• Pixels:DimensionOrder
3244
3227http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_ID
3228http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeC
3229http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeT
3230http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeX
3231
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeY
3232
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeZ
3233
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_Type
3234
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheC
3235
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheT
3236
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheZ
3237
http://www.openmicroscopy.org/site/support/ome-model/
3238
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_ID
3239
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_SamplesPerPixel
3240
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_AcquisitionDate
3241
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_ID
3242
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Name
3243http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/BinaryFile_xsd.html#BinData_BigEndian
3244http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_DimensionOrder
19.2. Metadata fields
350
• Pixels:ID
3245
• Pixels:SizeC
3246
• Pixels:SizeT3247
• Pixels:SizeX3248
• Pixels:SizeY
3249
• Pixels:SizeZ
3250
• Pixels:Type
3251
• Plane:TheC
3252
• Plane:TheT
3253
• Plane:TheZ
3254
Totalsupported: 17
Totalunknown ormissing: 456
19.2.96 APNGReader
This page listssupported metadata fields for theBio-Formats Animated PNG formatreader.
Thesefields are from theOMEdatamodel
3255
.Bio-Formatsstandardizeseach format’s originalmetadatato and from the OME
data model so thatyou can work with a particular piece of metadata (e.g. physicalwidth of theimagein microns) in aformat-
independentway.
Of the473 fields documented in themetadatasummarytable:
• Thefileformatitself supports17 ofthem(3%).
• Ofthose, Bio-Formats fully or partially converts17 (100%).
Supported fields
Thesefieldsare fully supportedby theBio-FormatsAnimated PNG format reader:
• Channel:ID
3256
• Channel:SamplesPerPixel
3257
• Image:AcquisitionDate
3258
• Image:ID3259
• Image:Name3260
• Pixels:BinDataBigEndian
3261
• Pixels:DimensionOrder
3262
3245
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_ID
3246
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeC
3247http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeT
3248http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeX
3249http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeY
3250http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeZ
3251http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_Type
3252http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheC
3253http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheT
3254http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheZ
3255http://www.openmicroscopy.org/site/support/ome-model/
3256http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_ID
3257http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_SamplesPerPixel
3258
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_AcquisitionDate
3259
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_ID
3260
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Name
3261
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/BinaryFile_xsd.html#BinData_BigEndian
3262
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_DimensionOrder
19.2. Metadata fields
351
• Pixels:ID
3263
• Pixels:SizeC
3264
• Pixels:SizeT3265
• Pixels:SizeX3266
• Pixels:SizeY
3267
• Pixels:SizeZ
3268
• Pixels:Type
3269
• Plane:TheC
3270
• Plane:TheT
3271
• Plane:TheZ
3272
Totalsupported: 17
Totalunknown ormissing: 456
19.2.97 PrairieReader
This page listssupported metadata fields for theBio-Formats PrairieTIFF formatreader.
Thesefields are from theOMEdatamodel
3273
.Bio-Formatsstandardizeseach format’s originalmetadatato and from the OME
data model so thatyou can work with a particular piece of metadata (e.g. physicalwidth of theimagein microns) in aformat-
independentway.
Of the473 fields documented in themetadatasummarytable:
• Thefileformatitself supports43 ofthem(9%).
• Ofthose, Bio-Formats fully or partially converts43 (100%).
Supported fields
Thesefieldsare fully supportedby theBio-FormatsPrairie TIFFformatreader:
• Channel:ID
3274
• Channel:Name
3275
• Channel:SamplesPerPixel
3276
• Detector:ID3277
• Detector:Type3278
• Detector:Zoom
3279
• DetectorSettings:Gain
3280
3263http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_ID
3264
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeC
3265http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeT
3266http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeX
3267
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeY
3268
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeZ
3269
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_Type
3270
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheC
3271
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheT
3272
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheZ
3273
http://www.openmicroscopy.org/site/support/ome-model/
3274
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_ID
3275
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_Name
3276
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_SamplesPerPixel
3277
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Detector_ID
3278
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Detector_Type
3279
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Detector_Zoom
3280
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#DetectorSettings_Gain
19.2. Metadata fields
352
• DetectorSettings:ID
3281
• DetectorSettings:Offset
3282
• Image:AcquisitionDate3283
• Image:ID3284
• Image:InstrumentRef
3285
• Image:Name
3286
• Instrument:ID
3287
• Laser:ID
3288
• Laser:Power
3289
• Microscope:Model
3290
• Objective:Correction
3291
• Objective:ID
3292
• Objective:Immersion
3293
• Objective:LensNA
3294
• Objective:Manufacturer3295
• Objective:NominalMagnification3296
• ObjectiveSettings:ID
3297
• Pixels:BinDataBigEndian
3298
• Pixels:DimensionOrder
3299
• Pixels:ID
3300
• Pixels:PhysicalSizeX
3301
• Pixels:PhysicalSizeY
3302
• Pixels:SizeC
3303
• Pixels:SizeT
3304
• Pixels:SizeX
3305
• Pixels:SizeY3306
3281
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#DetectorSettings_ID
3282
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#DetectorSettings_Offset
3283
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_AcquisitionDate
3284http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_ID
3285http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#InstrumentRef_ID
3286http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Name
3287http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Instrument_ID
3288http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#LightSource_ID
3289http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#LightSource_Power
3290
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#ManufacturerSpec_Model
3291
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Objective_Correction
3292
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Objective_ID
3293
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Objective_Immersion
3294
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Objective_LensNA
3295
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#ManufacturerSpec_Manufacturer
3296
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Objective_NominalMagnification
3297
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#ObjectiveSettings_ID
3298
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/BinaryFile_xsd.html#BinData_BigEndian
3299
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_DimensionOrder
3300
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_ID
3301
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeX
3302http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeY
3303http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeC
3304http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeT
3305http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeX
3306http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeY
19.2. Metadata fields
353
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