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Supported fields
These fields are fully supportedby the Bio-Formats Varian FDF format reader:
• Channel:ID
3682
• Channel:SamplesPerPixel
3683
• Image:AcquisitionDate
3684
• Image:ID
3685
• Image:Name
3686
• Pixels:BinDataBigEndian
3687
• Pixels:DimensionOrder
3688
• Pixels:ID3689
• Pixels:PhysicalSizeX3690
• Pixels:PhysicalSizeY
3691
• Pixels:PhysicalSizeZ
3692
• Pixels:SizeC
3693
• Pixels:SizeT
3694
• Pixels:SizeX
3695
• Pixels:SizeY
3696
• Pixels:SizeZ
3697
• Pixels:Type
3698
• Plane:PositionX
3699
• Plane:PositionY3700
• Plane:PositionZ3701
• Plane:TheC
3702
• Plane:TheT
3703
• Plane:TheZ
3704
Total supported: 23
Total unknown or missing: 450
3682
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_ID
3683
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_SamplesPerPixel
3684
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_AcquisitionDate
3685
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_ID
3686
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Name
3687
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/BinaryFile_xsd.html#BinData_BigEndian
3688
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_DimensionOrder
3689
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_ID
3690
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeX
3691
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeY
3692
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeZ
3693
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeC
3694
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeT
3695
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeX
3696
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeY
3697
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeZ
3698
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_Type
3699
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_PositionX
3700
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_PositionY
3701
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_PositionZ
3702http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheC
3703http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheT
3704http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheZ
19.2. Metadata fields
374
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19.2.116 VGSAMReader
This page lists supported metadata fields for the Bio-Formats VG SAM format reader.
These fields are from theOMEdatamodel
3705
.Bio-Formats standardizes each format’s original metadata to and from the OME
data model so that you can work with a particular piece of metadata (e.g. physical width of the image in microns) in a format-
independent way.
Of the 473 fields documented in themetadatasummarytable:
• The file format itself supports 17 ofthem(3%).
• Ofthose, Bio-Formats fully or partially converts 17 (100%).
Supported fields
These fields are fully supportedby the Bio-Formats VG SAMformatreader:
• Channel:ID
3706
• Channel:SamplesPerPixel3707
• Image:AcquisitionDate3708
• Image:ID
3709
• Image:Name
3710
• Pixels:BinDataBigEndian
3711
• Pixels:DimensionOrder
3712
• Pixels:ID
3713
• Pixels:SizeC
3714
• Pixels:SizeT
3715
• Pixels:SizeX
3716
• Pixels:SizeY
3717
• Pixels:SizeZ
3718
• Pixels:Type3719
• Plane:TheC3720
• Plane:TheT
3721
• Plane:TheZ
3722
Total supported: 17
Total unknown or missing: 456
3705
http://www.openmicroscopy.org/site/support/ome-model/
3706
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_ID
3707
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_SamplesPerPixel
3708
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_AcquisitionDate
3709
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_ID
3710
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Name
3711http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/BinaryFile_xsd.html#BinData_BigEndian
3712http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_DimensionOrder
3713http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_ID
3714http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeC
3715http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeT
3716http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeX
3717
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeY
3718
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeZ
3719
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_Type
3720
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheC
3721
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheT
3722
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheZ
19.2. Metadata fields
375
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19.2.117 VisitechReader
This page lists supported metadata fields for the Bio-Formats Visitech XYSformat reader.
These fields are from theOMEdatamodel
3723
.Bio-Formats standardizes each format’s original metadata to and from the OME
data model so that you can work with a particular piece of metadata (e.g. physical width of the image in microns) in a format-
independent way.
Of the 473 fields documented in themetadatasummarytable:
• The file format itself supports 17 ofthem(3%).
• Ofthose, Bio-Formats fully or partially converts 17 (100%).
Supported fields
These fields are fully supportedby the Bio-Formats VisitechXYS format reader:
• Channel:ID
3724
• Channel:SamplesPerPixel3725
• Image:AcquisitionDate3726
• Image:ID
3727
• Image:Name
3728
• Pixels:BinDataBigEndian
3729
• Pixels:DimensionOrder
3730
• Pixels:ID
3731
• Pixels:SizeC
3732
• Pixels:SizeT
3733
• Pixels:SizeX
3734
• Pixels:SizeY
3735
• Pixels:SizeZ
3736
• Pixels:Type3737
• Plane:TheC3738
• Plane:TheT
3739
• Plane:TheZ
3740
Total supported: 17
Total unknown or missing: 456
3723
http://www.openmicroscopy.org/site/support/ome-model/
3724
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_ID
3725
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_SamplesPerPixel
3726
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_AcquisitionDate
3727
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_ID
3728
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Name
3729http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/BinaryFile_xsd.html#BinData_BigEndian
3730http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_DimensionOrder
3731http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_ID
3732http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeC
3733
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeT
3734
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeX
3735
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeY
3736
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeZ
3737
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_Type
3738
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheC
3739
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheT
3740
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheZ
19.2. Metadata fields
376
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19.2.118 VolocityClippingReader
This page lists supported metadata fields for the Bio-Formats Volocity Library Clipping format reader.
These fields are from theOMEdatamodel
3741
.Bio-Formats standardizes each format’s original metadata to and from the OME
data model so that you can work with a particular piece of metadata (e.g. physical width of the image in microns) in a format-
independent way.
Of the 473 fields documented in themetadatasummarytable:
• The file format itself supports 17 ofthem(3%).
• Ofthose, Bio-Formats fully or partially converts 17 (100%).
Supported fields
These fields are fully supportedby the Bio-Formats Volocity Library Clipping format reader:
• Channel:ID
3742
• Channel:SamplesPerPixel3743
• Image:AcquisitionDate3744
• Image:ID
3745
• Image:Name
3746
• Pixels:BinDataBigEndian
3747
• Pixels:DimensionOrder
3748
• Pixels:ID
3749
• Pixels:SizeC
3750
• Pixels:SizeT
3751
• Pixels:SizeX
3752
• Pixels:SizeY
3753
• Pixels:SizeZ
3754
• Pixels:Type3755
• Plane:TheC3756
• Plane:TheT
3757
• Plane:TheZ
3758
Total supported: 17
Total unknown or missing: 456
3741
http://www.openmicroscopy.org/site/support/ome-model/
3742
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_ID
3743
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_SamplesPerPixel
3744
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_AcquisitionDate
3745
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_ID
3746
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Name
3747http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/BinaryFile_xsd.html#BinData_BigEndian
3748http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_DimensionOrder
3749http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_ID
3750http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeC
3751http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeT
3752http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeX
3753http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeY
3754http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeZ
3755http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_Type
3756http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheC
3757
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheT
3758
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheZ
19.2. Metadata fields
377
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19.2.119 VolocityReader
This page lists supported metadata fields for the Bio-Formats Volocity Library format reader.
These fields are from theOMEdatamodel
3759
.Bio-Formats standardizes each format’s original metadata to and from the OME
data model so that you can work with a particular piece of metadata (e.g. physical width of the image in microns) in a format-
independent way.
Of the 473 fields documented in themetadatasummarytable:
• The file format itself supports 35 ofthem(7%).
• Ofthose, Bio-Formats fully or partially converts 35 (100%).
Supported fields
These fields are fully supportedby the Bio-Formats Volocity Library format reader:
• Channel:ID
3760
• Channel:Name3761
• Channel:SamplesPerPixel3762
• Detector:ID
3763
• Detector:Model
3764
• DetectorSettings:ID
3765
• Image:AcquisitionDate
3766
• Image:Description
3767
• Image:ID
3768
• Image:InstrumentRef
3769
• Image:Name
3770
• Instrument:ID
3771
• Objective:Correction
3772
• Objective:ID3773
• Objective:Immersion3774
• Objective:NominalMagnification
3775
• ObjectiveSettings:ID
3776
• Pixels:BinDataBigEndian
3777
3759
http://www.openmicroscopy.org/site/support/ome-model/
3760
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_ID
3761
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_Name
3762
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_SamplesPerPixel
3763
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Detector_ID
3764
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#ManufacturerSpec_Model
3765
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#DetectorSettings_ID
3766
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_AcquisitionDate
3767
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Description
3768
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_ID
3769
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#InstrumentRef_ID
3770
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Name
3771
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Instrument_ID
3772
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Objective_Correction
3773
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Objective_ID
3774
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Objective_Immersion
3775
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Objective_NominalMagnification
3776
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#ObjectiveSettings_ID
3777
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/BinaryFile_xsd.html#BinData_BigEndian
19.2. Metadata fields
378
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• Pixels:DimensionOrder
3778
• Pixels:ID
3779
• Pixels:PhysicalSizeX3780
• Pixels:PhysicalSizeY3781
• Pixels:PhysicalSizeZ
3782
• Pixels:SizeC
3783
• Pixels:SizeT
3784
• Pixels:SizeX
3785
• Pixels:SizeY
3786
• Pixels:SizeZ
3787
• Pixels:Type
3788
• Plane:PositionX
3789
• Plane:PositionY
3790
• Plane:PositionZ
3791
• Plane:TheC3792
• Plane:TheT3793
• Plane:TheZ
3794
Total supported: 35
Total unknown or missing: 438
19.2.120 WATOPReader
This page lists supported metadata fields for the Bio-Formats WA Technology TOP format reader.
These fields are from theOMEdatamodel
3795
.Bio-Formats standardizes each format’s original metadata to and from the OME
data model so that you can work with a particular piece of metadata (e.g. physical width of the image in microns) in a format-
independent way.
Of the 473 fields documented in themetadatasummarytable:
• The file format itself supports 20 ofthem(4%).
• Ofthose, Bio-Formats fully or partially converts 20 (100%).
3778
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_DimensionOrder
3779
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_ID
3780
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeX
3781
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeY
3782
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeZ
3783
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeC
3784
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeT
3785
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeX
3786
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeY
3787
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeZ
3788
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_Type
3789
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_PositionX
3790http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_PositionY
3791http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_PositionZ
3792http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheC
3793
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheT
3794
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheZ
3795
http://www.openmicroscopy.org/site/support/ome-model/
19.2. Metadata fields
379
Supported fields
These fields are fully supportedby the Bio-Formats WA Technology TOP format reader:
• Channel:ID
3796
• Channel:SamplesPerPixel
3797
• Image:AcquisitionDate
3798
• Image:Description
3799
• Image:ID
3800
• Image:Name
3801
• Pixels:BinDataBigEndian
3802
• Pixels:DimensionOrder3803
• Pixels:ID3804
• Pixels:PhysicalSizeX
3805
• Pixels:PhysicalSizeY
3806
• Pixels:SizeC
3807
• Pixels:SizeT
3808
• Pixels:SizeX
3809
• Pixels:SizeY
3810
• Pixels:SizeZ
3811
• Pixels:Type
3812
• Plane:TheC
3813
• Plane:TheT3814
• Plane:TheZ3815
Total supported: 20
Total unknown or missing: 453
19.2.121 BMPReader
This page lists supported metadata fields for the Bio-Formats Windows Bitmap format reader.
3796
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_ID
3797
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_SamplesPerPixel
3798
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_AcquisitionDate
3799
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Description
3800
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_ID
3801
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Name
3802http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/BinaryFile_xsd.html#BinData_BigEndian
3803http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_DimensionOrder
3804http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_ID
3805http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeX
3806http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeY
3807
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeC
3808
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeT
3809
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeX
3810
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeY
3811
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeZ
3812
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_Type
3813
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheC
3814
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheT
3815
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheZ
19.2. Metadata fields
380
These fields are from theOMEdatamodel
3816
.Bio-Formats standardizes each format’s original metadata to and from the OME
data model so that you can work with a particular piece of metadata (e.g. physical width of the image in microns) in a format-
independent way.
Of the 473 fields documented in themetadatasummarytable:
• The file format itself supports 19 ofthem(4%).
• Ofthose, Bio-Formats fully or partially converts 19 (100%).
Supported fields
These fields are fully supportedby the Bio-Formats Windows Bitmapformat reader:
• Channel:ID
3817
• Channel:SamplesPerPixel
3818
• Image:AcquisitionDate
3819
• Image:ID
3820
• Image:Name
3821
• Pixels:BinDataBigEndian
3822
• Pixels:DimensionOrder
3823
• Pixels:ID
3824
• Pixels:PhysicalSizeX3825
• Pixels:PhysicalSizeY3826
• Pixels:SizeC
3827
• Pixels:SizeT
3828
• Pixels:SizeX
3829
• Pixels:SizeY
3830
• Pixels:SizeZ
3831
• Pixels:Type
3832
• Plane:TheC
3833
• Plane:TheT
3834
• Plane:TheZ
3835
Total supported: 19
Total unknown or missing: 454
3816http://www.openmicroscopy.org/site/support/ome-model/
3817
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_ID
3818
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_SamplesPerPixel
3819
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_AcquisitionDate
3820
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_ID
3821
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Name
3822
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/BinaryFile_xsd.html#BinData_BigEndian
3823
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_DimensionOrder
3824
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_ID
3825
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeX
3826
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_PhysicalSizeY
3827
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeC
3828
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeT
3829http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeX
3830http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeY
3831http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeZ
3832
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_Type
3833
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheC
3834
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheT
3835
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheZ
19.2. Metadata fields
381
19.2.122 ZeissTIFFReader
This page lists supported metadata fields for the Bio-Formats Zeiss AxioVision TIFF format reader.
These fields are from theOMEdatamodel
3836
.Bio-Formats standardizes each format’s original metadata to and from the OME
data model so that you can work with a particular piece of metadata (e.g. physical width of the image in microns) in a format-
independent way.
Of the 473 fields documented in themetadatasummarytable:
• The file format itself supports 17 ofthem(3%).
• Ofthose, Bio-Formats fully or partially converts 17 (100%).
Supported fields
These fields are fully supportedby the Bio-Formats Zeiss AxioVision TIFF format reader:
• Channel:ID
3837
• Channel:SamplesPerPixel3838
• Image:AcquisitionDate3839
• Image:ID
3840
• Image:Name
3841
• Pixels:BinDataBigEndian
3842
• Pixels:DimensionOrder
3843
• Pixels:ID
3844
• Pixels:SizeC
3845
• Pixels:SizeT
3846
• Pixels:SizeX
3847
• Pixels:SizeY
3848
• Pixels:SizeZ
3849
• Pixels:Type3850
• Plane:TheC3851
• Plane:TheT
3852
• Plane:TheZ
3853
Total supported: 17
Total unknown or missing: 456
3836
http://www.openmicroscopy.org/site/support/ome-model/
3837
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_ID
3838
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_SamplesPerPixel
3839
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_AcquisitionDate
3840
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_ID
3841http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Name
3842http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/BinaryFile_xsd.html#BinData_BigEndian
3843http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_DimensionOrder
3844
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_ID
3845http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeC
3846http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeT
3847
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeX
3848
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeY
3849
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeZ
3850
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_Type
3851
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheC
3852
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheT
3853
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheZ
19.2. Metadata fields
382
19.2.123 ZeissZVIReader
This page lists supported metadata fields for the Bio-Formats Zeiss Vision Image (ZVI)format reader.
These fields are from theOMEdatamodel
3854
.Bio-Formats standardizes each format’s original metadata to and from the OME
data model so that you can work with a particular piece of metadata (e.g. physical width of the image in microns) in a format-
independent way.
Of the 473 fields documented in themetadatasummarytable:
• The file format itself supports 17 ofthem(3%).
• Ofthose, Bio-Formats fully or partially converts 17 (100%).
Supported fields
These fields are fully supportedby the Bio-Formats Zeiss Vision Image (ZVI) formatreader:
• Channel:ID
3855
• Channel:SamplesPerPixel3856
• Image:AcquisitionDate3857
• Image:ID
3858
• Image:Name
3859
• Pixels:BinDataBigEndian
3860
• Pixels:DimensionOrder
3861
• Pixels:ID
3862
• Pixels:SizeC
3863
• Pixels:SizeT
3864
• Pixels:SizeX
3865
• Pixels:SizeY
3866
• Pixels:SizeZ
3867
• Pixels:Type3868
• Plane:TheC3869
• Plane:TheT
3870
• Plane:TheZ
3871
Total supported: 17
Total unknown or missing: 456
3854
http://www.openmicroscopy.org/site/support/ome-model/
3855
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_ID
3856
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Channel_SamplesPerPixel
3857
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_AcquisitionDate
3858
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_ID
3859
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Image_Name
3860
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/BinaryFile_xsd.html#BinData_BigEndian
3861
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_DimensionOrder
3862
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_ID
3863
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeC
3864
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeT
3865
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeX
3866
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeY
3867
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_SizeZ
3868
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Pixels_Type
3869
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheC
3870
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheT
3871
http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2012-06/ome_xsd.html#Plane_TheZ
19.2. Metadata fields
383
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