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13.5.2 How to build – Mac OS X
The following commands willgenerateand build theBio-Formats C++ bindings:
# generate the C++ bindings
cd components/scifio
mvn -DskipTests package dependency:copy-dependencies cppwrap:wrap
# compile the C++ bindings
cd target/cppwrap
mkdir build
cd build
cmake ..
make
13.6 Building C++ bindings in Linux
13.6.1 Compile-time dependencies – Linux
Thefollowing directionsarespecifictoUbuntuLinux. OtherLinux distributionsmayhavesimilarpackagesavailable;checkyour
packagemanager.
To installdependencieson Ubuntu Linux,execute:
# install code generation prerequisites
sudo aptitude install maven2
# install build prerequisites
sudo aptitude install build-essential cmake libboost-thread-dev
# install Java Development Kit
sudo aptitude install sun-java6-jdk
sudo update-alternatives --config java
Then selectSun’sJava implementation as thesystem default.
Itmaybepossibleto useadifferentJavacompiler(i.e.,omitthesun-java6-jdk packageand update-alternativesstep), butwehave
only tested thecompilation process with Sun’sJavacompiler.
13.6.2 How to build – Linux
The following commands willgenerateand build theBio-Formats C++ bindings:
# generate the Bio-Formats C++ bindings
cd components/scifio
mvn -DskipTests package dependency:copy-dependencies cppwrap:wrap
# build the Bio-Formats C++ bindings
cd target/cppwrap
mkdir build
cd build
cmake ..
make
13.6. Building C++bindings in Linux
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CHAPTER
FOURTEEN
SCIFIO
SCIFIO providesthecore architectureof the Bio-Formats library and also includes reader and writer implementations for open
fileformats. ThemorepermissiveBSDlicenseenablesnon-GPLthird partysoftwareto read and writeOME-TIFFusing SCIFIO
alone.
14.1 SCientific Imaging Formats Input and Output
SCIFIO is a refactoring ofBio-Formats. Classic Bio-Formats usesOME-XML
1
to model the metadatafor agiven image, stan-
dardizing allsupported formats to this schema. This tight integration, along with thenaming itself of Bio-Formats, discourages
potential users from outside the life sciences (if their imaging requirements include metadata outside the OME-XML specifi-
cation). Furthermore, the steps of processing image formats are obfuscated by their consolidation into a single Reader class;
this increases the entry barrier for 3rd party developers to add support for additional formats. Finally, the GPL licensing of
Bio-Formatsprecludesitsinclusion in non-GPL softwarepackages such as ImageJ,ITK,VCelland VisAD.
SCIFIO aimstoresolvetheseissuesby reversingtheOME-XMLdependency and teasingapartthestagesofimageformatconver-
sion andprocessing. SCIFIO willdefinethecorecomponentsofflexibleimageformatsupport. OME-XMLwillbecomeonetype
of metadata, which Bio-Formats willstilluseto standardize themetadata of awide variety of image formats. Thus Bio-Formats
willbecomean extension toSCIFIO,buttheunderlying structurewillallow any numberof such extensionsto coexist. Dynamic
discovery mechanismswillallowthesemodulestobeusedasneeded,aslongastheunderlyingprogramincorporatestheSCIFIO
core. Further, theSCIFIO corewillincludesupportonly fortheopen sourceformatscurrently supported by Bio-Formats, allow-
ing distribution undertheBSD license(though individualmodulescanfallunderany licensing framework, and Bio-Formatswill
continueto haveadualGPL + commerciallicense).
For further information, seetheSCIFIOhomepage
2
.
1
http://www.openmicroscopy.org/site/support/ome-model/ome-xml
2
http://scif.io/
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CHAPTER
FIFTEEN
WRITING NEW BIO-FORMATS FILE
FORMAT READERS
15.1 Bio-Formats file format reader guide
This documentis abriefguideto writing new Bio-Formatsfile formatreaders.
Allformatreadersshould extend eitherloci.formats.FormatReader
1
orareader inloci.formats.in
2
.
15.1.1 Methods to override
• booleanisSingleFile(Stringid)
3
Whether or notthenamedfileisexpected to betheonly fileinthedataset. This only needs
to beoverridden for formats whosedatasets can contain morethan onefile.
• booleanisThisType(RandomAccessInputStream)4 Check the firstfew bytesof afile to determineif thefilecan be read by
this reader. You can assumethatindex 0 in the stream correspondsto theindex 0 in the file. Return trueif the filecan be
read;falseifnot(orif there is noway of checking).
• intfileGroupOption(Stringid)
5
Returns an indication of whether or not the files in a multi-file dataset can be handled
individually. The return value should beone of the following:
– FormatTools.MUST_GROUP:thefiles cannotbehandledseparately
– FormatTools.CAN_GROUP: thefiles may behandled separately or asasingleunit
– FormatTools.CANNOT_GROUP:thefilesmustbehandled separately
This method only needsto be overridden for formatswhosedatasets can contain more than onefile.
• String[]getSeriesUsedFiles(booleannoPixels)
6
You only need to overridethis if yourformatuses multiplefiles in asingle
dataset. This method should return a list of all files associated with the given file name and thecurrentseries (i.e. every
fileneeded to display thecurrentseries). If thenoPixelsflag is set,then noneofthefiles returned should contain pixel
data. For an example of how this works, seeloci.formats.in.PerkinElmerReader
7
. It is recommended that the firstline of
thismethod beFormatTools.assertId(currentId, true, 1) -this ensuresthatthefilenameisnon-null.
• byte[]openBytes(int,byte[],int,int,int,int)8 Returnsabytearray containing thepixeldatafor asubimagespecified image
from thegiven file. The dimensions ofthesubimage(upperleft X coordinate, upper left Y coordinate, width, and height)
are specified in the final four int parameters. This should throw a FormatException if the image number is invalid
(lessthan0 or>=thenumberofimages). Theordering of thearrayreturned by openBytesshouldcorrespond to thevalues
returnedby isLittleEndian()and isInterleaved(). Also,thelength ofthebytearrayshouldbe[imagewidth*
imageheight* bytes per pixel]. Extrabyteswillgenerally betruncated. Itisrecommended thatthefirstlineof thismethod
beFormatTools.checkPlaneParameters(this, no, buf.length, x, y, w, h) - this ensures that
allof theparametersare valid.
1
https://github.com/openmicroscopy/bioformats/blob/develop/components/scifio/src/loci/formats/FormatReader.java
2
https://github.com/openmicroscopy/bioformats/blob/develop/components/bio-formats/src/loci/formats/in/
3
http://hudson.openmicroscopy.org.uk/job/BIOFORMATS-trunk/javadoc/loci/formats/IFormatReader.html#isSingleFile(java.lang.String)
4
http://hudson.openmicroscopy.org.uk/job/BIOFORMATS-trunk/javadoc/loci/formats/IFormatReader.html#isThisType(loci.common.RandomAccessInputStream)
5
http://hudson.openmicroscopy.org.uk/job/BIOFORMATS-trunk/javadoc/loci/formats/IFormatReader.html#fileGroupOption(java.lang.String)
6
http://hudson.openmicroscopy.org.uk/job/BIOFORMATS-trunk/javadoc/loci/formats/IFormatReader.html#getSeriesUsedFiles(boolean)
7
https://github.com/openmicroscopy/bioformats/blob/develop/components/bio-formats/src/loci/formats/in/PerkinElmerReader.java
8
http://hudson.openmicroscopy.org.uk/job/BIOFORMATS-trunk/javadoc/loci/formats/IFormatReader.html#openBytes(int,byte[],int,int,int,int)
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• protectedvoidinitFile(String)
9
The majority of the file parsing logic should be placed in this method. The idea is to
call this method once (and only once!) when the file is first opened. Generally, you will want to start by calling su-
per.initFile(String). You will also need to set up the stream for reading the file, as well as initializing any
dimensioninformation and metadata. Mostofthislogicisup to you;however,you should populatethe‘core’ variable(see
loci.formats.CoreMetadata10).
Note that each variable is initialized to 0 or null when super.initFile(String) is called. Also, su-
per.initFile(String) constructs aHashtable called “metadata” whereyou should storeany relevantmetadata.
• publicvoidclose(booleanfileOnly)
11
Cleansup any resourcesused by thereader. Globalvariablesshould beresetto their
initialstate, and any open filesor delegatereaders should beclosed.
Note that if the new format is a variant of a format currently supported by Bio-Formats, it is more efficient to make the new
reader a subclass of theexisting reader (rather than subclassingFormatReader
12
). In thiscase, itisusually sufficientto override
initFile(String) and isThisType(byte[]).
Everyreader also hasan instanceofloci.formats.CoreMetadata
13
.Allreaders shouldpopulatethefields in CoreMetadata, which
areessentialto reading image planes.
IfyoureadfromafileusingsomethingotherthanRandomAccessInputStream
14
orLocation
15
,youmustusethefilenamereturned
by Location.getMappedId(String), not the file name passed to the reader. Thus, a stub for initFile(String)
mightlook likethis:
protected void initFile(String id) throws FormatException, IOException {
super.initFile(id);
RandomAccessInputStream in = new RandomAccessInputStream(id);
// alternatively,
//FileInputStream in = new FileInputStream(Location.getMappedId(id));
// read basic file structure and metadata from stream
}
For moredetails, seetheBio-FormatsJavadocs
16
forLocation.mapId(String,String)and Location.getMappedId(String).
15.1.2 Variables to populate
Thereareanumber of globalvariablesdefined inloci.formats.FormatReader
17
thatshould bepopulatedin theconstructorofany
implemented reader.
Thesevariables are:
• boolean suffixNecessary Indicates whether ornotafilenamesuffix isrequired;true by default
• boolean suffixSufficientIndicates whether or notaspecificfilenamesuffix guaranteesthatthis readercan open a
particularfile;true by default
• boolean hasCompanionFilesIndicateswhetherornotthereisatleastonefileinadatasetofthisformatthatcontains
only metadata(no images);false by default
• String datasetDescriptionAbrief descriptionofthelayoutoffiles in datasetsofthis format;only necessary for
multi-file datasets
• String[]
domains An array of imaging domains for which this format is used. Domains are defined in
loci.formats.FormatTools
18
.
9
http://hudson.openmicroscopy.org.uk/job/BIOFORMATS-trunk/javadoc/loci/formats/FormatReader.html#initFile(java.lang.String)
10
https://github.com/openmicroscopy/bioformats/blob/develop/components/scifio/src/loci/formats/CoreMetadata.java
11
http://hudson.openmicroscopy.org.uk/job/BIOFORMATS-trunk/javadoc/loci/formats/IFormatReader.html#close(boolean)
12
https://github.com/openmicroscopy/bioformats/blob/develop/components/scifio/src/loci/formats/FormatReader.java
13
https://github.com/openmicroscopy/bioformats/blob/develop/components/scifio/src/loci/formats/CoreMetadata.java
14
https://github.com/openmicroscopy/bioformats/blob/develop/components/common/src/loci/common/RandomAccessInputStream.java
15
https://github.com/openmicroscopy/bioformats/blob/develop/components/common/src/loci/common/Location.java
16
http://hudson.openmicroscopy.org.uk/job/BIOFORMATS-trunk/javadoc/
17
https://github.com/openmicroscopy/bioformats/blob/develop/components/scifio/src/loci/formats/FormatReader.java
18
https://github.com/openmicroscopy/bioformats/blob/develop/components/scifio/src/loci/formats/FormatTools.java
15.1. Bio-Formats file format reader guide
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15.1.3 Other useful things
• loci.common.RandomAccessInputStream
19
isahybridRandomAccessFile/InputStreamclassthatisgenerallymoreefficient
than either RandomAccessFile or InputStream, and implements the DataInput interface. It is recommended that you use
thisfor reading files.
• loci.formats.Location
20
provides an API similar to java.io.File, and supports File-like operations on URLs. It is highly
recommendedthatyou usethis instead of File. SeetheJavadocs
21
for additionalinformation.
• loci.common.DataTools
22
provides a number of methods for converting bytes to shorts, ints, longs, etc. It also supports
reading mostprimitivetypesdirectly from aRandomAccessInputStream (or otherDataInputimplementation).
• loci.formats.ImageTools
23
provides severalmethodsfor manipulating primitivetypearrays thatrepresentimages. Consult
thesourceor Javadocsfor moreinformation.
• If your reader relies on third-party code which may not be available to all users, it is strongly suggested that you make
acorresponding service class that interfaces with the third-party code. Please seeBio-Formatsserviceanddependency
infrastructureforadescriptionoftheserviceinfrastructure,aswellastheloci.formats.servicespackage24.
• Several common image compression types are supported through subclasses ofloci.formats.codec.BaseCodec25. These
includeJPEG,LZW,LZO, Base64, ZIP and RLE (PackBits).
• If you wish toconvertafile’s metadatatoOME-XML(strongly encouraged), pleaseseeBio-Formatsmetadataprocessing
for further information.
• Utilitymethodsforreading and writingindividualbitsfrom abytearray canbefound inloci.formats.codec.BitBuffer
26
and
loci.formats.codec.BitWriter
27
.
• Onceyou havewritten your fileformatreader,add alineto thereaders.txt
28
filewith thefully qualified nameof thereader,
followed by a ‘#’ and the file extensions associated with thefile format. NotethatImageReader
29
,the master file format
reader, tries to identify which format reader to use according to the order given inreaders.txt
30
,so be sure to place your
readerin an appropriateposition within thelist.
• The easiest way to test your new reader is by calling “java loci.formats.tools.ImageInfo <file name>”. If all goes well,
you should seeall of the metadata and dimension information, along with a window showing the images in the file. Im-
ageReader
31
can takeadditionalparameters;abrief listing is provided below for reference, butitis recommended thatyou
takealook atthe contentsofloci.formats.tools.ImageInfo32 to seeexactly whateach onedoes.
19https://github.com/openmicroscopy/bioformats/blob/develop/components/common/src/loci/common/RandomAccessInputStream.java
20https://github.com/openmicroscopy/bioformats/blob/develop/components/common/src/loci/common/Location.java
21http://hudson.openmicroscopy.org.uk/job/BIOFORMATS-trunk/javadoc/
22
https://github.com/openmicroscopy/bioformats/blob/develop/components/common/src/loci/common/DataTools.java
23
https://github.com/openmicroscopy/bioformats/blob/develop/components/scifio/src/loci/formats/ImageTools.java
24
https://github.com/openmicroscopy/bioformats/blob/develop/components/bio-formats/src/loci/formats/services/
25
https://github.com/openmicroscopy/bioformats/blob/develop/components/scifio/src/loci/formats/codec/BaseCodec.java
26
https://github.com/openmicroscopy/bioformats/blob/develop/components/scifio/src/loci/formats/codec/BitBuffer.java
27
https://github.com/openmicroscopy/bioformats/blob/develop/components/scifio/src/loci/formats/codec/BitWriter.java
28
https://github.com/openmicroscopy/bioformats/blob/develop/components/scifio/src/loci/formats/readers.txt
29
https://github.com/openmicroscopy/bioformats/blob/develop/components/scifio/src/loci/formats/ImageReader.java
30
https://github.com/openmicroscopy/bioformats/blob/develop/components/scifio/src/loci/formats/readers.txt
31
https://github.com/openmicroscopy/bioformats/blob/develop/components/scifio/src/loci/formats/ImageReader.java
32
https://github.com/openmicroscopy/bioformats/blob/develop/components/scifio-tools/src/loci/formats/tools/ImageInfo.java
15.1. Bio-Formats file format reader guide
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Argument
Action
-version
printthelibrary version and exit
file
theimage fileto read
-nopix
read metadataonly,notpixels
-nocore
do notoutputcoremetadata
-nometa
do notparseformat-specificmetadata table
-nofilter
do notfilter metadatafields
-thumbs
read thumbnailsinstead ofnormalpixels
-minmax
compute min/max statistics
-merge
combine separate channelsinto RGBimage
-nogroup
force multi-filedatasets to beread as individualfiles
-stitch
stitch files with similar names
-separate
splitRGBimageinto separatechannels
-expand
expand indexed color to RGB
-omexml
populate OME-XMLmetadata
-normalize
normalizefloating pointimages*
-fast
paintRGB imagesas quickly aspossible*
-debug
turn on debugging output
-range
specify rangeof planesto read (inclusive)
-series
specify which imageseriesto read
-swap
overridethedefaultinputdimension order
-shuffle
overridethedefaultoutputdimension order
-map
specify file on disk to which nameshould be mapped
-preload
pre-read entirefileinto abuffer;significantly reducesthetimerequired to read theimages, butrequiresmore
memory
-crop
crop imagesbeforedisplaying;argumentis‘x,y,w,h’
-autoscale
used in combination with ‘-fast’to automatically adjustbrightnessand contrast
-novalid
do notperform validation of OME-XML
-omexml-
only
only output thegenerated OME-XML
-format
read filewith aparticular reader(e.g., ZeissZVI)
*=may resultin loss of precision
• If you wish to test using TestNG,loci.tests.testng.FormatReaderTest
33
provides severalbasictests thatwork with allBio-
Formats readers. SeetheFormatReaderTestsourcecodefor additionalinformation.
• For more details, please look atthesourcecodeandJavadocs
34
. Studying existing readers is probably thebestway to get
afeel for the API;we would recommend first looking atloci.formats.in.ImarisReader
35
(this is the most straightforward
one).loci.formats.in.LIFReader36 andInCellReader37 are also good references that show off someof the nicer features of
Bio-Formats.
If you havequestionsaboutBio-Formats, pleasecontacttheOMEteam38.
33
https://github.com/openmicroscopy/bioformats/blob/develop/components/test-suite/src/loci/tests/testng/FormatReaderTest.java
34
http://hudson.openmicroscopy.org.uk/job/BIOFORMATS-trunk/javadoc/
35
https://github.com/openmicroscopy/bioformats/blob/develop/components/bio-formats/src/loci/formats/in/ImarisReader.java
36
https://github.com/openmicroscopy/bioformats/blob/develop/components/bio-formats/src/loci/formats/in/LIFReader.java
37
https://github.com/openmicroscopy/bioformats/blob/develop/components/bio-formats/src/loci/formats/in/InCellReader.java
38
http://www.openmicroscopy.org/site/community
15.1. Bio-Formats file format reader guide
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CHAPTER
SIXTEEN
CONTRIBUTING TO BIO-FORMATS
16.1 Developing Bio-Formats
Ifyou areinterestedinworking ontheBio-Formatssourcecodeitself,you can load itintoyourfavoriteIDE,or develop withyour
favoritetexteditor.
The Bio-Formats code is divided into several projects. Core components are located in subfolders of thecomponents
1
folder,
withsomecomponentsfurtherclassifiedintocomponents/forks
2
,components/legacy
3
,components/native
4
orcomponents/stubs
5
,
depending on the natureoftheproject.
Each projecthas acorresponding Maven POMfile, which can beused to work with theprojectin your favoriteIDE, or from the
command line, onceyou have cloned thesource. Instructionsfor severalpopular optionsfollow.
16.1.1 NetBeans
NetBeanscomes with Maven support builtin. To importtheBio-Formatssource, perform thefollowing steps:
1. ChooseFile> Open Projectfrom themenu
2. Selectthetop-levelfolderof your Bio-Formats working copy
3. Expand theModulesfolder and double-click desired project(s) to work with them
Alternately,you can clonethesourcedirectly from NetBeans into aprojectby selecting “Team> Git> Clone Other...” from the
menu.
16.1.2 Eclipse
Eclipse uses the M2E plugin to work with Maven projects. It is more flexible than Eclipse’s built-in project management
because M2E transparently converts between project dependencies and JAR dependencies (stored in the Maven repository in
~/.m2/repository)on the build path, depending which projectsarecurrently open.
To importtheBio-Formats source into Eclipse3.7 (Indigo),you mustfirstinstalltheM2E plugin:
1. From the Eclipsemenu,chooseHelp > InstallNew Software...
2. In the“Work with:” dropdown, choose“–AllAvailableSites–“
3. In thefilterbox,type “m2e”
4. Check thebox nextto “m2e -Maven Integration for Eclipse”under “Collaboration”
5. Click Next, then Finish
YoucanthenimporttheBio-Formatssourcebychoosing “File>Import>Existing Maven Projects”fromthemenuandbrowsing
to thetop-levelfolder of your Bio-Formatsworking copy.
1
https://github.com/openmicroscopy/bioformats/blob/develop/components/
2
https://github.com/openmicroscopy/bioformats/blob/develop/components/forks/
3
https://github.com/openmicroscopy/bioformats/blob/develop/components/legacy/
4
https://github.com/openmicroscopy/bioformats/blob/develop/components/native/
5
https://github.com/openmicroscopy/bioformats/blob/develop/components/stubs/
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16.1.3 Command line
If you prefer developing code with a text editor such as vim or emacs, you can use the Ant or Maven command line tools to
compileBio-Formats. TheBio-Formatssourcetreeprovidesparallelbuildsystemsforboth Antand Maven,so you canuseeither
oneto buildthecode.
For alistof Anttargets, run:
ant -p
When using Maven, Bio-Formats is configured to run the “install” target by default, so all JARs will be copied into your local
Maven repositoryin ~/.m2/repository. Simply run:
mvn
With either Antor Maven,you can usesimilar commands in any subprojectfolder to build justthatcomponent.
16.2 Testing individual commits (internal developers)
At the bottom of many commit messages inhttps://github.com/openmicroscopy/bioformats, you will find a few lines similar to
this:
To test, please run:
ant -Dtestng.directory=$DATA/metamorph test-automated
This showsthe command(s)necessary to run automated testsagainstthefileslikely to beaffected by thatcommit. Ifyou wantto
run these tests, you willneed to do the following:
Clonebioformats.gitandcheckouttheappropriatebranch(byfollowing thedirectionson theGitusage6 page). Run thiscommand
to build allof the JARfiles:
$ ant clean jars
Switch to thetest-suitecomponent:
$ cd components/test-suite
Run thetests,where$DATA is thepath to thefulldatarepository:
$ ant -Dtestng.directory=$DATA/metamorph test-automated
Bydefault,512 MBofmemoryareallocatedtotheJVM.You can increasethisbyadding the‘-Dtestng.memory=XXXm’ option.
Youshould now seeoutputsimilar to this:
Buildfile: build.xml
init-title:
[echo] ----------=========== loci-testing-framework ===========----------
init-timestamp:
init-version:
init-manifest-cp:
6
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16.2. Testing individual commits (internaldevelopers)
81
init:
copy-source:
compile:
test-automated:
[testng] [Parser] Running:
[testng]
LOCI software test suite
[testng]
[testng] Scanning for files...
[testng] Building list of tests...
[testng] Ready to test 490 files
[testng] ........................................
and then eventually:
[testng] ===============================================
[testng] LOCI software test suite
[testng] Total tests run: 19110, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 16 minutes 42 seconds
Each of the dots represents a single passed test; a ‘-‘ is a skipped test, and an ‘F’ is a failed test. This is mostly just for your
amusementifyou happento bestaring attheconsolewhilethetestsrun,asamoredetailed reportislogged to loci-software-test-
$DATE.log (where“$DATE” is thedateon which thetestsstarted in “yyyy-MM-dd_hh-mm-ss” format).
If Antreports thatthebuild was successful, then thereis nothing thatyou need to do. Otherwise,itis helpful if you can provide
thecommand,branch name, number of failuresatthe bottom of theAntoutput,and theloci-software-test-*.logfile.
16.3 Public test data
Mostof thedata-driven testswouldbenefitfrom having acomprehensive setof public sample data(seealso#4086
7
).
Formats for which wealready havepublicsampledata:
A‘*’indicates thatwe could generatemorepublic datain thisformat.
• ICS (*)
• LeicaLEI
• IPLab
• BMP(*)
• Image-Pro SEQ
• QuickTime(*)
• Bio-Rad PIC
• Image-Pro Workspace
• Fluoview/ABD TIFF (*)
• Perkin ElmerUltraview
• Gatan DM3
• ZeissLSM
7
http://trac.openmicroscopy.org.uk/ome/ticket/4086
16.3. Public test data
82
• Openlab LIFF (*)
• LeicaLIF (*)
• TIFF (*)
• Khoros(http://netghost.narod.ru/gff/sample/images/viff/index.htm )
• MNG (Download
8
)(*)
Formats for which wecan definitely generatepublicsampledata:
• PNG/APNG
• JPEG
• PGM
• FITS
• PCX
• GIF
• Openlab Raw
• OME-XML
• OME-TIFF
• AVI
• PICT
• LIM
• PSD
• Targa
• Bio-Rad Gel
• Fake
• ECAT-7 (minctoecat)
• NRRD
• JPEG-2000
• Micromanager
• Text
• DICOM
• MINC(rawtominc)
• NIfTI (dicomnifti)
• Analyze7.5 (medcon)
• SDT
• FV1000 .oib/.oif
• ZeissZVI
• LeicaTCS
• Aperio SVS
• Imaris(raw)
Formats for which I need to check whether or notwecan generatepublic sampledata:
• IPLab Mac (Ivision)
• Deltavision
8http://sourceforge.net/projects/libmng/files/libmng-testsuites/Release-20030305/MNGsuite-20030305.zip/download?use_mirror=freefr&download=
16.3. Public test data
83
Documents you may be interested
Documents you may be interested