mvc open pdf in browser : Extract color image from pdf in c# control SDK system web page winforms .net console Bio-Formats-4.4.99-part856

• MRC
• GatanDM2
• Imaris(HDF)
• EPS
• AliconaAL3D
• Visitech
• InCell
• L2D
• FEI
• NAF
• MRW
• ARF
• LI-FLIM
• OxfordInstruments
• VG-SAM
• HamamatsuHIS
• WA-TOP
• Seiko
• TopoMetrix
• UBM
• Quesant
• RHK
• MolecularImaging
• JEOL
• Amira
• Unisoku
• PerkinElmerDensitometer
• NikonND2
• SimplePCI.cxd
• Imaris(TIFF)
• MolecularDevicesGel
• Imacon.fff
• LEO
• JPK
• NikonNEF
• NikonTIFF
• Prairie
• MetamorphTIFF/STK/ND
• ImprovisionTIFF
• PhotoshopTIFF
• FEITIFF
16.3. Publictestdata
84
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Support PDF Image Extraction from a Page, a Region on a Page, and PDF Document
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• SimplePCITIFF
• Burleigh
• SM-Camera
• SBIG
Formatsforwhichwedefinitelycannotgeneratepublicsampledata:
• TillVision
• OlympusCellR/APL
• Slidebook
• Cellomics
• CellWorX
• OlympusScanR
• BDPathway
• OperaFlex
• MIAS
16.4 Bio-Formatsserviceanddependencyinfrastructure
16.4.1 Description
TheBio-Formatsserviceinfrastructureisaninterfacedrivenpatternfordealingwithexternalandinternaldependencies.Thede-
signgoalwasmainlytoavoidthecumbersomeusageofReflectedUniversewherepossibleandtoclearlydefinebothservice
dependencyandinterfacebetweencomponents. Thisisgenerallyreferredtoasdependencyinjection9,dependencyinversion10
orcomponentbaseddesign11.
Itwasdecided,atthispoint,toforgotheusageofpotentiallymorepowerfulbutalsomorecomplicatedsolutionssuchas:
• Spring(http://spring.io)
• Guice(http://code.google.com/p/google-guice/)
• ...
TheWikipediapagefordependencyinjection
12
containsmanyotherimplementationsinmanylanguages.
AnaddedbenefitisthepotentialcodereusepossibilitiesasaresultofdecouplingofdependencyandusageinBio-Formatsreaders.
ImplementationsoftheinitialBio-FormatsserviceswerecompletedaspartofBioFormatsCleanupandtickets#463
13
and#464
14
.
16.4.2 Writingaservice
• Interface–Thebasicformofaserviceisaninterfacewhichinheritsfromloci.common.services.Service
15
. Hereisthe
verybasicOMENotesService
16
fromtheinitialimplementationinr5894:
9
http://en.wikipedia.org/wiki/Dependency_injection
10http://en.wikipedia.org/wiki/Dependency_inversion_principle
11http://en.wikipedia.org/wiki/Component-based_software_engineering
12http://en.wikipedia.org/wiki/Dependency_injection
13http://trac.openmicroscopy.org.uk/ome/ticket/463
14
http://trac.openmicroscopy.org.uk/ome/ticket/464
15
https://github.com/openmicroscopy/bioformats/blob/develop/components/common/src/loci/common/services/Service.java
16
https://github.com/openmicroscopy/bioformats/blob/develop/components/common/src/loci/common/services/OMENotesService.java
16.4. Bio-Formatsserviceanddependencyinfrastructure
85
C# PDF insert text Library: insert text into PDF content in C#.net
Ability to change text font, color, size and location and output a new PDF document. XDoc.PDF for .NET empowers C# developers to add multiple text processing
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C# WPF PDF Viewer SDK to annotate PDF document in C#.NET
Users can set graph annotation properties, such as fill color, line color and transparency. Support to create a text box annotation to PDF file. C#.NET WPF PDF
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public interface OMENotesService extends Service {
/**
* Creates a new OME Notes instance.
* @param filename Path to the file to create a Notes instance for.
*/
public void newNotes(String filename);
}
• Implementation–Thisservicethenhasanimplementation,whichisusuallylocatedintheBio-Formatscomponentor
packagewhichimportsclassesfromanexternal,dynamicorotherdependency.AgainlookingattheOMENotesService,
theimplementationisthistimeinthelegacyome-notescomponentasOMENotesServiceImpl
17
:
public class OMENotesServiceImpl extends AbstractService
implements OMENotesService {
/**
* Default constructor.
*/
public OMENotesServiceImpl() {
checkClassDependency(Notes.class);
}
/* (non-Javadoc)
* @see loci.formats.dependency.OMENotesService#newNotes()
*/
public void newNotes(String filename) {
new Notes(null, filename);
}
}
• Style
– ExtensionofAbstractServicetoenableuniformruntimedependencycheckingisrecommended.Javadoesnot
checkclassdependenciesuntilclassesarefirstinstantiatedsoifyoudonotdothis,youmayendupwithClass-
NotFoundorthelikeexceptionsbeingemittedfromyourservicemethods.Thisistobestronglydiscouraged.Ifa
servicehasunresolvableclassesonitsCLASSPATHinstantiationshouldfail,notservicemethodinvocation.
– Servicemethodsshouldnotburdentheimplementerwithnumerouscheckedexceptions. Alsoexternaldependency
exceptioninstancesshouldnotbeallowedtodirectlyleakfromaserviceinterface. PleasewraptheseusingaSer-
viceException.
– Byconventionboththeinterfaceandimplementationareexpectedtobeinapackagenamedloci.*.services.
Thisisnotahardrequirementbutshouldbefollowedwherepossible.
• Registration
A
service’s interface and implementation
must finally be registered with
the
loci.common.services.ServiceFactory
18
viatheservices.properties
19
file.FollowingtheOMENotesServiceagain,here
isanexampleregistration:
...
# OME notes service (implementation in legacy ome-notes component)
loci.common.services.OMENotesService=loci.ome.notes.services.OMENotesServiceImpl
...
17
https://github.com/openmicroscopy/bioformats/blob/develop/components/legacy/ome-notes/src/loci/ome/notes/services/OMENotesServiceImpl.java
18
https://github.com/openmicroscopy/bioformats/blob/develop/components/common/src/loci/common/services/ServiceFactory.java
19https://github.com/openmicroscopy/bioformats/blob/develop/components/common/src/loci/common/services/Service.java
16.4. Bio-Formatsserviceanddependencyinfrastructure
86
C# PDF File Compress Library: Compress reduce PDF size in C#.net
file with multiple ways with C# Programming Language Program.RootPath + "\\" 3_optimized.pdf"; // create optimizing Options for Color Image -- // to enable
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How to C#: Overview of Using XImage.Raster
Able to support text extract with OCR. Perform annotation capabilities to mark, draw, and visualize objects on image document page. Provide complete color manage
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16.4.3 Usingaservice
OMENotesService service = null;
try {
ServiceFactory factory = new ServiceFactory();
service = factory.getInstance(OMENotesService.class);
}
catch (DependencyException de) {
LOGGER.info(””, de);
}
...
SeeopenTracticketsforBio-Formats20 forinformationonworkcurrentlyplannedorinprogress.
20
https://trac.openmicroscopy.org.uk/ome/report/44
16.4. Bio-Formatsserviceanddependencyinfrastructure
87
C# TIFF: TIFF Editor SDK to Read & Manipulate TIFF File Using C#.
3. Save Tiff file with color profile. 1. Extract text from Tiff file. Various types annotation objects can be added to your loaded Tiff image file in C#
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How to C#: Color and Lightness Effects
PDF, VB.NET convert PDF to text, VB.NET extract PDF pages, VB Raster SDK, you can get and modify the color and lightness effects of image by assigning
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Part IV
Formats
88
C#: Use OCR SDK Library to Get Image and Document Text
using this OCR SDK to extract image and document scanned document or image-only PDF using C# Support both monochrome and bitonal color image recognition for
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C# Raster - Modify Image Palette in C#.NET
convert PDF to images, C#.NET PDF file & pages edit, C#.NET PDF pages extract, copy, paste Note: if the image itself does not contain palette Color then we
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Bio-Formatssupportsover120differentfileformats.TheDatasetStructureTableexplainsthefileextensionyoushouldchoose
toopen/importadatasetinanyoftheseformats,whiletheSupportedFormatstablelistsalloftheformatsandgivesanindication
ofhowwelltheyaresupportedandwhetherBio-Formatscanwrite,aswellasread,eachformat. TheSummaryofsupported
metadatafieldstableshowsanoverviewoftheOMEdatamodelfieldspopulatedforeachformat.
Wearealwayslookingforexamplesoffilestohelpusprovidebettersupportfordifferentformats.Ifyouwouldliketohelp,
youcanuploadfilesusingourQAsystemuploader21.Ifyouhaveanyquestions,orwouldprefernottouseQA,pleaseemailthe
ome-usersmailinglist
22
.Ifyourformatisalreadysupported,pleaserefertothe‘wewouldliketohave’sectionontheindividual
pageforthatformat,toseeifyourdatasetwouldbeusefultous.
21
http://qa.openmicroscopy.org.uk/qa/upload/
22
http://www.openmicroscopy.org/site/community/mailing-lists
89
C# HTML5 PDF Viewer SDK to annotate PDF document online in C#.NET
Users can set graph annotation properties, such as line thickness, color and transparency. C# HTML5 PDF Viewer: Annotate PDF Online.
pdf image extractor; extract pdf images
C# TIFF: How to Embed, Remove, Add and Update TIFF Color Profile
color profiles. Commonly, Tiff image color profiles like ICC and ICM are widely used in C#.NET imaging application. RasterEdge XDoc
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CHAPTER
SEVENTEEN
DATASET STRUCTURE TABLE
Thistableshowstheextensionofthefilethatyoushouldchooseifyouwanttoopen/importadatasetinaparticularformat.
Formatname
Filetochoose
Structureoffiles
AIM
.aim
Singlefile
ARF
.arf
Singlefile
AdobePhotoshop
.psd
Singlefile
AdobePhotoshopTIFF
.tif,.tiff
Singlefile
AliconaAL3D
.al3d
Singlefile
Amersham
Biosciences
GEL
.gel
Singlefile
Amira
.am,
.amiramesh,
.grey,.hx,.labels
Singlefile
Analyze7.5
.img,.hdr
One.imgfileandonesimilarly-named.hdrfile
AndorSIF
.sif
Singlefile
AnimatedPNG
.png
Singlefile
AperioSVS
.svs
Singlefile
AudioVideoInterleave
.avi
Singlefile
BDPathway
.exp,.tif
Multiplefiles(.exp,.dye,.ltp,...)plusoneormoredirec-
toriescontaining.tifand.bmpfiles
Bio-RadGEL
.1sc
Singlefile
Bio-RadPIC
.pic,.xml,.raw
Oneormore.picfilesandanoptionallse.xmlfile
BitplaneImaris
.ims
Singlefile
BitplaneImaris3(TIFF)
.ims
Singlefile
BitplaneImaris5.5(HDF)
.ims
Singlefile
Bruker
(noextension)
One‘fid’andone‘acqp’plusseveralothermetadatafiles
anda‘pdata’directory
Burleigh
.img
Singlefile
CanonRAW
.cr2,.crw,.jpg,.thm,
.wav
Singlefile
CellSensVSI
.vsi,.ets
One.vsifileandanoptionaldirectorywithasimilarname
thatcontainsatleastonesubdirectorywith.etsfiles
CellWorx
.pnl,.htd,.log
One.htdfileplusoneormore.pnlor.tiffilesandoption-
allyoneormore.logfiles
CellomicsC01
.c01,.dib
Oneormore.c01files
CompixSimple-PCI
.cxd
Singlefile
DICOM
.dic, .dcm, .dicom,
.jp2,.j2ki,.j2kr,.raw,
.ima
Oneormore.dcmor.dicomfiles
DNG
.cr2,.crw,.jpg,.thm,
.wav,.tif,.tiff
Singlefile
Deltavision
.dv, .r3d, .r3d_d3d,
.dv.log,.r3d.log
One.dv,.r3d,or.d3dfileanduptotwooptional.logfiles
ECAT7
.v
Singlefile
EncapsulatedPostScript
.eps,.epsi,.ps
Singlefile
Continuedonnextpage
90
Table17.1–continuedfrompreviouspage
Formatname
Filetochoose
Structureoffiles
EvotecFlex
.flex,.mea,.res
Onedirectorycontainingoneormore.flexfiles,andan
optionaldirectorycontainingan.meaand.resfile. The
.meaand.resfilesmayalsobeinthesamedirectoryas
the.flexfile(s).
FEITIFF
.tif,.tiff
Singlefile
FEI/Philips
.img
Singlefile
Flexible Image Transport
System
.fits,.fts
Singlefile
FujiLAS3000
.img,.inf
Singlefile
GatanDM2
.dm2
Singlefile
GatanDigitalMicrograph
.dm3
Singlefile
Graphics Interchange For-
mat
.gif
Singlefile
HamamatsuAquacosmos
.naf
Singlefile
HamamatsuHIS
.his
Singlefile
HamamatsuNDPI
.ndpi
Singlefile
HamamatsuNDPIS
.ndpis
One.ndpisfileandatleastone.ndpifile
HamamatsuVMS
.vms
One.vmsfileplusseveral.jpgfiles
Hitachi
.txt
One.txtfileplusonesimilarly-named.tif,.bmp,or.jpg
file
IMAGIC
.hed,.img
One.hedfileplusonesimilarly-named.imgfile
IMOD
.mod
Singlefile
INR
.inr
Singlefile
IPLab
.ipl
Singlefile
IVision
.ipm
Singlefile
Imacon
.fff
Singlefile
ImageCytometryStandard
.ics,.ids
One.icsandpossiblyone.idswithasimilarname
Image-ProSequence
.seq
Singlefile
Image-ProWorkspace
.ipw
Singlefile
ImprovisionTIFF
.tif,.tiff
Singlefile
InCell1000/2000
.xdce,.xml,.tiff,.tif,
.xlog
One.xdcefilewithatleastone.tif/.tiffor.imfile
InCell3000
.frm
Singlefile
JEOL
.dat,.img,.par
Asingle.datfileoran.imgfilewithasimilarly-named
.parfile
JPEG
.jpg,.jpeg,.jpe
Singlefile
JPEG-2000
.jp2,.j2k,.jpf
Singlefile
JPKInstruments
.jpk
Singlefile
JPX
.jpx
Singlefile
KhorosXV
.xv
Singlefile
KodakMolecularImaging
.bip
Singlefile
LEO
.sxm,.tif,.tiff
Singlefile
LI-FLIM
.fli
Singlefile
LaboratoryImaging
.lim
Singlefile
Leica
.lei,.tif,.tiff,.raw
One.leifilewithatleastone.tif/.tifffileandanoptional
.txtfile
LeicaImageFileFormat
.lif
Singlefile
LeicaSCN
.scn
Singlefile
LeicaTCSTIFF
.tif,.tiff,.xml
Singlefile
Li-CorL2D
.l2d,.scn,.tif
One .l2d file with one or more directories containing
.tif/.tifffiles
MIAS
.tif,.tiff,.txt
Onedirectoryperplatecontainingonedirectoryperwell,
eachwithoneormore.tif/.tifffiles
MINCMRI
.mnc
Singlefile
MedicalResearchCouncil
.mrc, .st, .ali, .map,
.rec
Singlefile
Continuedonnextpage
91
Table17.1–continuedfrompreviouspage
Formatname
Filetochoose
Structureoffiles
MetamorphSTK
.stk,.nd,.tif,.tiff
Oneormore.stkor.tif/.tifffilesplusanoptional.ndfile
MetamorphTIFF
.tif,.tiff
Oneormore.tif/.tifffiles
Micro-Manager
.tif,.tiff,.txt,.xml
A‘metadata.txt’fileplusorormore.tiffiles
MinoltaMRW
.mrw
Singlefile
MolecularImaging
.stp
Singlefile
MultipleNetworkGraphics
.mng
Singlefile
NIfTI
.nii,.img,.hdr
Asingle.niifileorone.imgfileandasimilarly-named
.hdrfile
NOAA-HRD Gridded Data
Format
(noextension)
Singlefile
NRRD
.nrrd,.nhdr
Asingle.nrrdfileorone.nhdrfileandoneotherfilecon-
tainingthepixels
NikonElementsTIFF
.tif,.tiff
Singlefile
NikonND2
.nd2
Singlefile
NikonNEF
.nef,.tif,.tiff
Singlefile
NikonTIFF
.tif,.tiff
Singlefile
OME-TIFF
.ome.tif,.ome.tiff
Oneormore.ome.tifffiles
OME-XML
.ome
Singlefile
OlympusAPL
.apl,.tnb,.mtb,.tif
One.aplfile,one.mtbfile,one.tnbfile,andadirectory
containingoneormore.tiffiles
OlympusFV1000
.oib,.oif,.pty,.lut
Single.oibfileorone.oiffileandasimilarly-nameddi-
rectorycontaining.tif/.tifffiles
Olympus
Fluoview/ABD
TIFF
.tif,.tiff
Oneormore.tif/.tifffiles,andanoptional.txtfile
OlympusSISTIFF
.tif,.tiff
Singlefile
OlympusScanR
.dat,.xml,.tif
One.xmlfile,one‘data’directorycontaining.tif/.tifffiles,
andoptionallytwo.datfiles
OlympusSlidebook
.sld,.spl
Singlefile
OpenlabLIFF
.liff
Singlefile
OpenlabRAW
.raw
Singlefile
OxfordInstruments
.top
Singlefile
PCX
.pcx
Singlefile
PICT
.pict,.pct
Singlefile
POV-Ray
.df3
Singlefile
PerkinElmerDensitometer
.hdr,.img
One.hdrfileandasimilarly-named.imgfile
PerkinElmer
.ano,.cfg,.csv,.htm,
.rec,.tim,.zpo,.tif
One.htmfile,severalothermetadatafiles(.tim,.ano,.csv,
...)andeither.tiffilesor.2,.3,.4,etc.files
PerkinElmerOperetta
.tif,.tiff,.xml
DirectorywithXMLfileandone.tif/.tifffileperplane
PortableGrayMap
.pgm
Singlefile
PrairieTIFF
.tif,.tiff,.cfg,.xml
One.xmlfile,one.cfgfile,andoneormore.tif/.tifffiles
PyramidTIFF
.tif,.tiff
Singlefile
QuesantAFM
.afm
Singlefile
QuickTime
.mov
Singlefile
RHKTechnologies
.sm2,.sm3
Singlefile
SBIG
(noextension)
Singlefile
SMCamera
(noextension)
Singlefile
SPCImageData
.sdt
Singlefile
SPIDER
.spi
Singlefile
Seiko
.xqd,.xqf
Singlefile
SimplePCITIFF
.tif,.tiff
Singlefile
Simulateddata
.fake
Singlefile
TaggedImageFileFormat
.tif,.tiff,.tf2,.tf8,.btf
Singlefile
Text
.txt,.csv
Singlefile
TillVision
.vws,.pst,.inf
One.vwsfileandpossiblyonesimilarly-nameddirectory
TopoMetrix
.tfr,.ffr,.zfr,.zfp,.2fl
Singlefile
Continuedonnextpage
92
Table17.1–continuedfrompreviouspage
Formatname
Filetochoose
Structureoffiles
Trestle
.tif
One.tiffileplusseveralothersimilarly-namedfiles(e.g.
.FocalPlane-,.sld,.slx,.ROI)
TruevisionTarga
.tga
Singlefile
UBM
.pr3
Singlefile
UnisokuSTM
.hdr,.dat
One.HDRfileplusonesimilarly-named.DATfile
VGSAM
.dti
Singlefile
VarianFDF
.fdf
Singlefile
VisitechXYS
.xys,.html
One.htmlfileplusoneormore.xysfiles
VolocityLibrary
.mvd2, .aisf, .aiix,
.dat,.atsf
One.mvd2fileplusa‘Data’directory
VolocityLibraryClipping
.acff
Singlefile
WATechnologyTOP
.wat
Singlefile
WindowsBitmap
.bmp
Singlefile
ZeissAxioVisionTIFF
.tif,.xml
Singlefile
ZeissCZI
.czi
Singlefile
Zeiss Laser-Scanning Mi-
croscopy
.lsm,.mdb
Oneormore.lsmfiles;ifmultiple.lsmfilesarepresent,
an.mdbfileshouldalsobepresent
ZeissVisionImage(ZVI)
.zvi
Singlefile
Zip
.zip
Singlefile
17.1 FlexSupport
OMERO.importersupportsimportinganalyzedFlexfilesfromanOperasystem.
Basicconfigurationisdoneviatheimporter.ini.OncetheuserhasruntheImporteronce,thisfilewillbeinthefollowing
location:
• C:\Documents and Settings\<username>\omero\importer.ini
Theuserwillneedtomodifyoraddthe[FlexReaderServerMaps]sectionoftheINIfileasfollows:
...
[FlexReaderServerMaps]
CIA-1 = \\\\hostname1\\mount;\\\\archivehost1\\mount
CIA-2 = \\\\hostname2\\mount;\\\\archivehost2\\mount
wherethekeyoftheINIfilelineisthevalueofthe“Host”taginthe.meameasurementXMLfile(here:<Host name=”CIA-
1”>)andthevalueisasemicolon-separatedlistofescapedUNCpathnamestotheOperaworkstationswheretheFlexfiles
reside.
Oncethisresolutionhasbeenencodedintheconfigurationfileandyouhaverestartedtheimporter,youwillbeabletoselectthe
.meameasurementXMLfilefromtheImporteruserinterfaceastheimporttarget.
17.1. FlexSupport
93
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