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•Selected-text-based autolinks. These autolinks combine selected text (e.g.,

selected within a PDF view in Sente) with a template to produce a URL. This type

of autolink is used, for example, when adding PDFs to support easy searching

based on text within the PDF.

Both of these types of autolink templates are configured in the Autolinks Setup

pane, and both are explained below.

Reference-Based Autolinks

Reference-based autolinks have many different uses. For example, you can use

these autolinks to:

•Look up the publishers page for an article using the DOI;

•Look up the reference in an on-line literature resource such as PubMed or Web of

Knowledge using one or more identifiers (like PubMed ID);

•Look up a book at Amazon.com, the Library of Congress or WorldCat using an

ISBN;

•Search for related references using an identifier, or title, or other information

within a reference;

•Retrieve related material from a publisher’s site using a DOI;

•Search for other works by an author on Google Scholar or some other site.

Using Reference-Based Autolinks

To see the list of active autolinks for a reference, select the reference in Sente and

then either:

•Click on the autolinks button in the header of the attachment view, or

•Select the View > Attachment Pane > Autolinks command in the main menu.

The autolinks button in the attachment view header.

When you do this, the attachment pane will display a page containing all of the

active autolinks for the current reference.

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The autolinks page in the attachment view.

If you click on any entry in the list of autolinks, that web page will be displayed in

the attachment view.

The result of clicking on one of the autolinks in the attachment view.

The autolinks that are available for any given reference will depend on the data

found in the reference in your library. For example, every template that uses a DOI

value (without any other values) will be active for a reference that contains a DOI. If

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a reference does not include a DOI, templates that use a DOI will not produce an

autolink.

Whenever you click on a link in the attachment view that takes you to a PDF file,

Sente will automatically download the PDF and attach it to the selected reference.

For example, DOI.org provides a service for locating the authoritative web pages for

citations based on a citation’s Digital Object Identifier (DOI). This service is

accessed by loading a URL based on this pattern, or template: http://dx.doi.org/

{DOI}

(where “{DOI}” is replaced with an actual DOI). That is, if the DOI for a

reference is “10.123/100.456”, then the correct URL for the autolink would be

http://dx.doi.org/10.123/100.456

If an autolink can be generated for any given reference based on actual data in the

reference, the autolink will be shown in the Autolinks page and in the main menu,

under View > Attachment). For example, if a reference includes a value in the DOI

field, the doi.org autolink will be displayed when you click on the autolink icon and

clicking on that link will take you to whatever page doi.org has for that reference.

Sente comes with a number of built-in autolink templates, such as the DOI template

mentioned above and others from PubMed and other sources. Many times, these

web pages include links to the PDFs related to the references. It is easy to add

additional templates or to modify or delete any of the existing templates.

Adding and Editing Reference-Based Autolink Templates

Autolink templates can be edited in the Autolinks setup tab.

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The Autolink Setup pane.

The fields included for each template are:

•Active? Is this template active? That is, should it be considered when generating

autolinks? If any of the built-in templates are not useful to you, you can either

delete them entirely, or just turn them off here (by unchecking the Active? box)

so that they will not be used.

•Self? Does this template refer to the actual reference? That is, is the autolink

template related specifically to this reference, or is it related to similar but

different references?

•Source. This is the source of the autolink (e.g., PubMed, Google Scholar, etc.).

•Label Template. This is the text that will be presented as the link in the autolinks

page. The label can be just plain text (e.g., “The publisher’s page for this

reference”) or it can include fields from the reference, just like the URL template

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below (e.g., “Search Google Scholar for {articleTitle}”). See below for more on

field substitutions.

•URL Template. This is the template for the URL that will be used as the link. The

fields to be inserted into the template are indicated by placing the field names

within curly braces (e.g., “{PMID} for PubMed ID).

•Default? Should a page generated using this template be loaded by default in

the attachment view when there is no attachment?

To add an autolink template, click on the New Template button. To delete an

autolink, select the template in the list and press the Delete key on your keyboard.

(Alternatively, uncheck the Active? checkbox to retain the autolink without using it.)

Autolinks are presented on the autolinks page in the order the templates appear in

the setup pane. To change the order of the templates, click and drag an entry.

To restore the autolinks to their defaults, click on the Reset to Defaults.

Autolink URL and Label Template Parameters

When constructing an autolink template, both the URL and the label can be

parameterized; that is, they can use data from within the reference. Substitution

patterns embedded within the URL or label are of the form “{attribute}”, where the

value of “attribute” is taken from the lists below. The patterns may contain any

number of these fields.

Many of the common identifiers are useful when creating autolink templates. These

include:

•CODEN

•DOI

•ISBN

•ISSN

•OAI (Open Archive Initiative number)

•OCLCID

•PMID (PubMed ID)

•PMCID (PubMed Central ID)

•PII

•US LoC Control # (Library of Congress Control Number)

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Autolinks can also include regular fields, such as:

•affiliation

•articleTitle

•Edition

•intuitiveTitle (this is either the article title of the publication title, depending on

the reference type)

•ISSN

•issue

•language

•pages

•publicationCountry

•publicationTitle

•publicationType

•publicationYear

•publisher

•volume

These attributes may generate multiple autolinks for any particular reference:

•authorNames

•keywordValues

Examples

Here are a few autolink examples. Please note that the actual URLs shown are only

examples and may not be current.

•To search for other PubMed articles by the same authors: Source PubMed,

Label Template Articles by “{authorNames}”, URL Template http://

www.ncbi.nlm.nih.gov/pubmed?term={authorNames}

[Author]&cmd=DetailsSearch

•To search within Google Scholar for similar articles: Source Google Scholar,

Label Template Articles related to “{intuitiveTitle}”, URL Template http://

scholar.google.com/scholar?q={intuitiveTitle}

•To search for PubMed articles with certain keywords: Source PubMed, Label

Template Articles with keyword “{keywordValues}”, URL Template http://

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www.ncbi.nlm.nih.gov/pubmed?term=%22{keywordValues}%22[MeSH

%20Terms]&cmd=DetailsSearch

Text-Selection-Based Autolinks

Text-selection-based autolinks are used, for example, to make it easy to locate

citation data when adding PDFs to your library. When Sente is unable to locate the

citation data for a PDF automatically, it presents the PDF to you so you can select

text (like the title) and then quickly search one of your favorite web data sources.

Using Text-Selection-Based Autolinks

These autolinks are currently used in two places within Sente. First, when adding

PDFs to your library, you can use these templates to help locate the citation data for

a PDF. Second, when reading a PDF already in your library, you can use these

templates to look up, for example, a reference listed in the bibliography of the

current paper.

Invoking one of the text-selection-based autolinks while adding a PDF.

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Just after invoking the autolink selected in the previous ﬁgure.

Conﬁguring Text-Selection-Based Autolink Templates

These autolink templates are maintained in the Autolink Templates pane, just like

the reference-based autolinks.

The only difference between these templates and the reference-based templates is

in the substitution string within the template. Instead of using a field name within

curly braces (e.g., {affiliation}), the templates include “{SELECTED_TEXT}”. Whatever

is currently selected in the PDF at the time one of these templates is selected, will be

merged with the template to produce the effective URL.

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Some selected-text-based autolink templates. Even though the label ﬁeld also includes the SELECTED_TEXT

string, the label is not currently used within Sente and so this will never appear anywhere.

Hotwords Setup

When skimming through a large number of references (e.g., the results of a large

search) it can be helpful to have key words and phrases highlighted in titles and

abstracts to draw your eyes to those terms in the text. This can make it much easier

to identify those papers most directly related to your interests. Sente supports this

automatic highlighting through its Hotwords feature.

The highlighting of hotwords can be turned on and off using either the View >

Highlight Hotwords command in the main menu, or through the Hotwords toolbar

item.

Hotwords toolbar button, turned off and on.

If hotword highlighting is turned on, the “abc” on the hotwords button will be

highlighted, as shown in the image on the right, above.

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Hotwords highlighted in the reference editor.

Hotwords are managed in the Hotwords Setup area of the Library Setup category on

the source list.

Page 64

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